PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100022230112

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB_related

Protein Properties

Length: 258aa MW: 28714.2 Da PI: 10.4713

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100022230112	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.2	1.7e-12	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G+g W+tI + + R+ ++k++w++ Ote100022230112\|100022230112 5 KQKWTPEEEAALKAGVLKHGPGKWRTILKDPQfsgvlYLRSNVDLKDKWRN 55 79*********************************88*********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.658	1	58	IPR017930	Myb domain
SuperFamily	SSF46689	4.99E-16	2	80	IPR009057	Homeodomain-like
SMART	SM00717	4.9E-7	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-14	4	56	IPR009057	Homeodomain-like
Pfam	PF00249	2.7E-9	5	55	IPR001005	SANT/Myb domain
CDD	cd11660	2.03E-18	6	56	No hit	No description
SuperFamily	SSF46785	3.92E-6	117	156	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.7E-5	120	157	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MGAPKQKWTP EEEAALKAGV LKHGPGKWRT ILKDPQFSGV LYLRSNVDLK DKWRNMSVMA 60 NGWGSRERAR LALKRMKPGP KHGESSMALS TLSQSDDELA DARSLDLSCG SSPNDGPKRS 120 IMRLDNLILE AIRNLREPGG SNKTSIAAYI EMKRKYKIAA ASALSEPREN PSIPVEGRQR 180 ISPRIRHDDI GHLTKSEIDV ELAKMRSMTP EEAAAAAAQA VAEAEAAMAE AEEXXXRLVK 240 LRQQKLMQKQ HRLLPRQH

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088080.1	1e-124	telomere repeat-binding factor 1 isoform X1
Refseq	XP_020552115.1	1e-124	telomere repeat-binding factor 1 isoform X1
Swissprot	Q8VWK4	7e-76	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A4D8YTK0	1e-123	A0A4D8YTK0_SALSN; Myb proto-oncogene protein, plant
TrEMBL	A0A4D9BGI6	1e-123	A0A4D9BGI6_SALSN; Myb proto-oncogene protein, plant
STRING	Migut.B00451.1.p	1e-111	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2864	24	48

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]