PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100022490051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 634aa    MW: 69027.6 Da    PI: 6.2888
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100022490051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.78.8e-32284340259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g H h+
  Ote100022490051|100022490051 284 EDGYNWRKYGQKHVKGSEYPRSYYKCTHPSCPVKKKVERSQ-EGHITEIIYKGAHIHP 340
                                   7****************************************.***************8 PP
2WRKY104.46.1e-33456514159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  Ote100022490051|100022490051 456 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHD 514
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.55278342IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-28281342IPR003657WRKY domain
SuperFamilySSF1182906.54E-25282342IPR003657WRKY domain
SMARTSM007746.5E-35283341IPR003657WRKY domain
PfamPF031065.2E-24284340IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-37441516IPR003657WRKY domain
SuperFamilySSF1182901.22E-28448516IPR003657WRKY domain
PROSITE profilePS5081138.733451516IPR003657WRKY domain
SMARTSM007746.6E-38456515IPR003657WRKY domain
PfamPF031064.2E-25457514IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MGGFDDLVAV MGDWMPPSPN PRPFFSSVIS ESVPHFLGPE EEGASRNADL KDQTEANFGD  60
DETSNSHDLG GPKLSSRGGL IERIAARAGF NAPRLNTASI RHDDLSKKPE VRSPYLTIPP  120
GLSPTTLLES PVFLSNSLVL PSPTTGKFLF APSGDYQDSR LTTCDSDKGK EYNFEDMNAS  180
SFAFKPIAES ASFPYLAATN KSFPSAGFPV HSNITIPHRS TEPSKTHSAN NSAHFQEQSF  240
SKPDLGNTHS SSVAAEHSSP FDEQNDDGDQ RSGGDPNSVG SPSEDGYNWR KYGQKHVKGS  300
EYPRSYYKCT HPSCPVKKKV ERSQEGHITE IIYKGAHIHP MPPPNRGSTL ESDNLEATSS  360
ALLGQEYNNG LRAQNGAPFE SGDGVDRSST FSNNEDDEDR ATHCSVSLGY DGEGGGDESE  420
SKRRRIEAYT AEMSGAARPI REPRVVVQTT SEVDILDDGY RWRKYGQKVV KGNPNPRSYY  480
KCTSAGCNVR KHVERASHDL KSVITTYEGK HNHDVPAARN SGGQNTQQQQ PPPASRPEPS  540
QTHGTTNWFE RPPLGSFRPQ LGYGANQQGL AGLGFEGIGH NHPYLGNRGR PVDEMGFVLP  600
KGEPKMEPVT DAGLNSSNGF AIYQQLMSRL PLGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36284517878Probable WRKY transcription factor 4
2lex_A2e-36284517878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095658.10.0probable WRKY transcription factor 2
SwissprotQ9FG771e-171WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A0D5YAF40.0A0A0D5YAF4_SALMI; WRKY protein
STRINGPGSC0003DMT4000569520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37112341
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]