PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100022510011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

Trihelix

Protein Properties

Length: 348aa MW: 40389.8 Da PI: 8.3029

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100022510011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	103.9	1.2e-32	196	281	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+k e++aLi++r++++ +++++ k plWee+s++m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy Ote100022510011\|100022510011 196 RWPKVEIQALINLRTSLDLKYQESGPKSPLWEEISAAMAKLGYNRSSKRCKEKWENINKYFKKVKESSKKR-PEDSKTCPY 275 8*******************************************************************8.99*** PP trihelix 82 fdqlea 87 f+ql+a Ote100022510011\|100022510011 276 FHQLDA 281 **85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	2.8E-4	193	255	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.34	195	253	IPR017877	Myb-like domain
Pfam	PF13837	1.9E-23	195	282	No hit	No description
CDD	cd12203	1.95E-27	195	260	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MDDAFRDSSL KGPLWQEVSR KPPSAVNAVE FANPNATHYC FINCPESDQL SSFSTXXXXX 60 XXXXXXXXXS TSSDEDIQRR QGKKRKWKDF FNRLMKDVIH KQEELQRKFL DSLQKRERDR 120 MAREEAWRVQ EVARMNREHE ILVQERSIAA AKDAAVIAFL QKATEQNNLQ IPPPPKQVTP 180 ADNGGGNNAM PASSSRWPKV EIQALINLRT SLDLKYQESG PKSPLWEEIS AAMAKLGYNR 240 SSKRCKEKWE NINKYFKKVK ESSKKRPEDS KTCPYFHQLD AIYREKAAAF NVPIMARPEQ 300 QWPQQPDQAM PKQDKENESE NDDEEDEDEG GGRISSHLLR FERERREV

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MDDAFRDSSL KGPLWQEVSR KPPSAVNAVE FANPNATHYC FINCPESDQL SSFSTXXXXX  60
XXXXXXXXXS TSSDEDIQRR QGKKRKWKDF FNRLMKDVIH KQEELQRKFL DSLQKRERDR  120
MAREEAWRVQ EVARMNREHE ILVQERSIAA AKDAAVIAFL QKATEQNNLQ IPPPPKQVTP  180
ADNGGGNNAM PASSSRWPKV EIQALINLRT SLDLKYQESG PKSPLWEEIS AAMAKLGYNR  240
SSKRCKEKWE NINKYFKKVK ESSKKRPEDS KTCPYFHQLD AIYREKAAAF NVPIMARPEQ  300
QWPQQPDQAM PKQDKENESE NDDEEDEDEG GGRISSHLLR FERERREV

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010314480.1	1e-108	trihelix transcription factor GT-2-like
Swissprot	Q39117	8e-80	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A4D8ZZY4	1e-115	A0A4D8ZZY4_SALSN; Uncharacterized protein
STRING	Solyc12g056510.1.1	1e-108	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2402	24	59