PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100022610011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 173aa MW: 19935.3 Da PI: 4.1019

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100022610011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	93.8	2.7e-29	8	122	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGf+F+Ptdeel+v++L ++++ +++ ++i+++di++++P L++k+ ++kewyfFs ++nr+tk+g Ote100022610011\|100022610011 8 LPPGFQFDPTDEELIVNFLYPRATYSPCYP-NIIPHLDINETDPCGLHEKAFWSKKEWYFFSGL--------KQNRVTKKG 79 79***********************888.89**********976667899*865........679** PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +Wk+ g ++++++++g +vg+k+ Lvf + g+ ++W+m+e+rl Ote100022610011\|100022610011 80 FWKEVGLSENIFTSSGVEVGIKTYLVFC----SGGVDSNWIMEEFRL 122 ***********************9....567889*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-38	5	139	IPR003441	NAC domain
PROSITE profile	PS51005	32.434	8	141	IPR003441	NAC domain
Pfam	PF02365	3.8E-19	9	122	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MGEDQVALPP GFQFDPTDEE LIVNFLYPRA TYSPCYPNII PHLDINETDP CGLHEKAFWS 60 KKEWYFFSGL KQNRVTKKGF WKEVGLSENI FTSSGVEVGI KTYLVFCSGG VDSNWIMEEF 120 RLLNNCALQV QQLVLCRVRD SEEKTKDGDE LSYLDEVFFS MDDDDQDEIS FPT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-28	5	138	14	162	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-28	5	138	14	162	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-28	5	138	14	162	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-28	5	138	14	162	NO APICAL MERISTEM PROTEIN
3swm_A	1e-28	5	138	17	165	NAC domain-containing protein 19
3swm_B	1e-28	5	138	17	165	NAC domain-containing protein 19
3swm_C	1e-28	5	138	17	165	NAC domain-containing protein 19
3swm_D	1e-28	5	138	17	165	NAC domain-containing protein 19
3swp_A	1e-28	5	138	17	165	NAC domain-containing protein 19
3swp_B	1e-28	5	138	17	165	NAC domain-containing protein 19
3swp_C	1e-28	5	138	17	165	NAC domain-containing protein 19
3swp_D	1e-28	5	138	17	165	NAC domain-containing protein 19
4dul_A	1e-28	5	138	14	162	NAC domain-containing protein 19
4dul_B	1e-28	5	138	14	162	NAC domain-containing protein 19
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011099725.1	5e-61	NAC domain-containing protein 104
TrEMBL	A0A4D9A0K9	7e-74	A0A4D9A0K9_SALSN; Uncharacterized protein
STRING	VIT_04s0044g01500.t01	8e-49	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13785	12	15