PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100023940121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 160aa MW: 17826.1 Da PI: 8.1329

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100023940121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	145.3	1.8e-45	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca+dCv+ pyfpa++p+kfa vhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i+ Ote100023940121\|100023940121 11 PCAACKLLRRRCAEDCVFEPYFPADEPHKFASVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAIS 91 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lqqq+++l+++lal+++e Ote100023940121\|100023940121 92 SLQQQIDSLQTQLALAQAE 110 ************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.795	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-45	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MKERKQGAAA PCAACKLLRR RCAEDCVFEP YFPADEPHKF ASVHKVFGAS NVNKMLQELP 60 EHQRGDAVSS MVYEANARVR DPVYGCVGAI SSLQQQIDSL QTQLALAQAE VVHMRMRQYS 120 SNSSSPDNAS PSARGRRSHQ AKNQSCFNMD MANMDDSFWP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-49	7	112	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-49	7	112	7	112	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090495.1	1e-95	LOB domain-containing protein 4-like
Swissprot	Q9SHE9	3e-66	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A4D9BCN8	4e-91	A0A4D9BCN8_SALSN; Uncharacterized protein
STRING	Migut.D00564.1.p	3e-91	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669