PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100025190021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 358aa    MW: 39529.9 Da    PI: 6.3221
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100025190021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY795.2e-25250317159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE........EEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk........versaedpkvveitYegeHnhe 59 
                                   ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+        v+r+a+d +++++tYeg+Hnh+
  Ote100025190021|100025190021 250 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQitevlknqVQRCADDMSILITTYEGTHNHP 317
                                   58***************************99****9963333333389*******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-28235319IPR003657WRKY domain
SuperFamilySSF1182902.22E-23242319IPR003657WRKY domain
PROSITE profilePS5081124.214245319IPR003657WRKY domain
SMARTSM007743.4E-31250318IPR003657WRKY domain
PfamPF031065.2E-25251317IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDISLHKEEI KPSESNGDEE SCVEEIVFHQ VGAGKRAEDI DGMKPSSPDQ KKLNCSKLQG  60
LATTKMKRPS PESESRSSSS AKKEELDQLG STKAEMDEVV EENQRLKMYL DRVLKDYRTL  120
QMQYRDIIQH DTTDHQTQTQ SETSDHKNID LTLGIGDARK TTKIEAADHK QGLSLGLDCK  180
FNLPGKSQAE SSPENSAEEV KGGAAGGETW LPKGIKNVRE GGDEEDDISQ QNPTKRARVS  240
VRVRCDTPTM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP SCPVRKQITE VLKNQVQRCA  300
DDMSILITTY EGTHNHPLPI SATAMASTTS AAASMLMSGS STSTSXXXXX XXXXXXXX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-192503191777Probable WRKY transcription factor 4
2lex_A5e-192503191777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtIn association with WRKY72A, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071617.11e-112probable WRKY transcription factor 72
SwissprotD8VNC61e-100WK72B_SOLLC; WRKY transcription factor 72B
TrEMBLA0A4D9C2S21e-128A0A4D9C2S2_SALSN; Uncharacterized protein
STRINGMigut.I00135.1.p1e-110(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19452464
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]