PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100025190022

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

WRKY

Protein Properties

Length: 287aa MW: 31971.6 Da PI: 6.5172

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100025190022	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	57.2	3.2e-18	250	287	1	37
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+ Ote100025190022\|100025190022 250 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQ 287 58*************************99****7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.3E-18	235	287	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-16	242	287	IPR003657	WRKY domain
PROSITE profile	PS50811	18.911	245	287	IPR003657	WRKY domain
SMART	SM00774	2.3E-8	250	287	IPR003657	WRKY domain
Pfam	PF03106	1.5E-15	251	287	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MDISLHKEEI KPSESNGDEE SCVEEIVFHQ VGAGKRAEDI DGMKPSSPDQ KKLNCSKLQG 60 LATTKMKRPS PESESRSSSS AKKEELDQLG STKAEMDEVV EENQRLKMYL DRVLKDYRTL 120 QMQYRDIIQH DTTDHQTQTQ SETSDHKNID LTLGIGDARK TTKIEAADHK QGLSLGLDCK 180 FNLPGKSQAE SSPENSAEEV KGGAAGGETW LPKGIKNVRE GGDEEDDISQ QNPTKRARVS 240 VRVRCDTPTM NDGCQWRKYG QKIAKGNPCP RAYYRCTVAP SCPVRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	In association with WRKY72A, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269\|PubMed:20409007}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269\|PubMed:20409007}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071617.1	5e-93	probable WRKY transcription factor 72
Swissprot	D8VNC6	1e-80	WK72B_SOLLC; WRKY transcription factor 72B
TrEMBL	A0A4D9C2S2	1e-109	A0A4D9C2S2_SALSN; Uncharacterized protein
STRING	Migut.I00135.1.p	3e-92	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1945	24	64

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326]