PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100025250011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family TALE
Protein Properties Length: 208aa    MW: 24365.7 Da    PI: 6.5282
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100025250011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.21.8e-101361702155
                                   HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   k +yps+++++ LA+++gL+++q+ +WF N+R ++
  Ote100025250011|100025250011 136 KWPYPSESQKQALAESTGLDQKQINNWFINQRKRH 170
                                   569*****************************885 PP
2ELK38.82e-1390111122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELK qLlr YsgyLgsLkqEF+
  Ote100025250011|100025250011  90 ELKGQLLRRYSGYLGSLKQEFM 111
                                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012562.5E-24253IPR005541KNOX2
PfamPF037911.9E-21652IPR005541KNOX2
PROSITE profilePS5121310.91290110IPR005539ELK domain
PfamPF037898.7E-1190111IPR005539ELK domain
SMARTSM011888.6E-890111IPR005539ELK domain
PROSITE profilePS5007113.232110173IPR001356Homeobox domain
SMARTSM003892.5E-13112177IPR001356Homeobox domain
SuperFamilySSF466895.56E-20112187IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.4E-29115175IPR009057Homeodomain-like
CDDcd000863.26E-12122174No hitNo description
PfamPF059207.7E-18130169IPR008422Homeobox KN domain
PROSITE patternPS000270148171IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSRSNVGEDP ALDQFMEAYC EMLIKYEQEL SKPFKEAMRF LSRIEFQFKS LTLSPSAAAA  60
CVETMETNGS PEEEADVNNN FIDPLAEDRE LKGQLLRRYS GYLGSLKQEF MKKRKKGKLP  120
KEARQQLLDW WSRHYKWPYP SESQKQALAE STGLDQKQIN NWFINQRKRH WKPSEDMQFV  180
VMDATHPHYY MDNVLGNPFP MDISPALL
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889118.11e-125homeobox protein SBH1
SwissprotO222991e-116LET6_SOLLC; Homeobox protein knotted-1-like LET6
TrEMBLA0A4D9AZG11e-130A0A4D9AZG1_SALSN; Uncharacterized protein
STRINGEOY288071e-122(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433