PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100025990061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LBD

Protein Properties

Length: 111aa MW: 12082.2 Da PI: 8.7164

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100025990061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.2	1.7e-30	2	105	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 +C++C+vlr++C+++C+l+p++ p++q++++ +++k++G++ +++l+++ p + r+++++sl+yeA+ r+ Pv+G+ Ote100025990061\|100025990061 2 SCNGCRVLRKGCVNNCTLRPCLqwiesPESQANATLFLAKFYGRAGLINLIQSGPAHLRPEIFRSLLYEACGRIISPVHGS 82 6****************************************************************************** PP DUF260 77 vgvilklqqqleqlkaelallke 99 +g+++++++q +q+++e++ll++ Ote100025990061\|100025990061 83 LGLMSSGHWQRCQAAVEAVLLGA 105 ***************998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.502	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.7E-25	2	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MSCNGCRVLR KGCVNNCTLR PCLQWIESPE SQANATLFLA KFYGRAGLIN LIQSGPAHLR 60 PEIFRSLLYE ACGRIISPVH GSLGLMSSGH WQRCQAAVEA VLLGAPLAMQ L

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011076777.1	2e-65	LOB domain-containing protein 42-like
Swissprot	Q9CA30	6e-58	LBD42_ARATH; LOB domain-containing protein 42
TrEMBL	A0A4D9AVN2	7e-66	A0A4D9AVN2_SALSN; Uncharacterized protein
STRING	Migut.O00688.1.p	2e-60	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA886	24	94