PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100028450031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

AP2

Protein Properties

Length: 274aa MW: 30748 Da PI: 9.7002

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100028450031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.8	2e-11	127	182	2	55
AP2 2 gykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a+ k++g Ote100028450031\|100028450031 127 IFRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAAIKYWG 182 69****************5444.2455536655.779999************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	9.81E-15	126	191	IPR016177	DNA-binding domain
CDD	cd00018	2.10E-17	126	191	No hit	No description
Pfam	PF00847	7.0E-9	127	182	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	16.871	127	190	IPR001471	AP2/ERF domain
SMART	SM00380	6.5E-22	127	196	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.4E-12	127	190	IPR001471	AP2/ERF domain
SMART	SM00380	0.051	226	263	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MDMXXXXXXX XHPNWLVFSL SNHSLFQPSF SSLPSSSAGV DPDDNGSGRA IAGPKLEDFL 60 GGGGASSMPD VDIYDDSELK TIAASFLRGF SSDQQNDNSQ KQIAAAPPPP DPPAKKTVES 120 FGQRTSIFRG VTRHRWTGRY EAHLWDNSCR REGQSRKGRQ GGYDKEEKAA RAYDLAAIKY 180 WGPTTTTNFP VCDYAKEMEE MKHMTRQEFV ASLRRRSSGF SRGASIYRGV TRHHQHGRWQ 240 ARIGRVAGNK DLYLGTXXXX XXXXXXXXXT FLWV

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269\|PubMed:15988559}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027068737.1	1e-127	AP2-like ethylene-responsive transcription factor AIL5
Swissprot	Q6PQQ3	1e-102	AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBL	A0A4D9BLM4	1e-133	A0A4D9BLM4_SALSN; AP2-like factor, ANT lineage
STRING	Migut.J01490.1.p	1e-114	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2246	24	57

Publications ? help Back to Top
Todd J,Post-Beittenmiller D,Jaworski JG KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana. Plant J., 1999. 17(2): p. 119-30 [PMID:10074711] Molitor AM,Bu Z,Yu Y,Shen WH Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes. PLoS Genet., 2014. 10(1): p. e1004091 [PMID:24465219] Feng J,Chen D,Berr A,Shen WH ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development. Plant Physiol., 2016. 172(3): p. 1746-1759 [PMID:27630184] Santuari L, et al. The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398]