PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100029421111

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 152aa MW: 16689.2 Da PI: 10.2578

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100029421111	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.2e-05	38	72	15	54
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+ ++++ L++l+ + +K + a++L +A+eYI+ L Ote100029421111\|100029421111 38 RVSERISALQQLVSPF-----GKTDTASVLLEAMEYINFL 72 78899******998.....8*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.287	23	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.93E-11	31	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.51E-6	31	77	No hit	No description
SMART	SM00353	0.0025	31	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-7	33	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MMQHKRSPVS VDQNTFVNLM PKRLKIDGPL SSKEKKERVS ERISALQQLV SPFGKTDTAS 60 VLLEAMEYIN FLHEQVKVLS APYIYSTQTQ QIQGLSFVQI NTLRAKGLCL VPTSFTLGVA 120 GSNGADIWAP IKTSPSNSRR SVSSEASSIT FG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011091561.1	6e-75	transcription factor bHLH113 isoform X2
Refseq	XP_011091562.1	6e-75	transcription factor bHLH113 isoform X2
Swissprot	Q7XJU2	2e-45	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A2G9GQ11	4e-73	A0A2G9GQ11_9LAMI; Uncharacterized protein
STRING	Migut.N03067.1.p	1e-71	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10428	8	11

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]