PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100029510041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MYB

Protein Properties

Length: 1684aa MW: 183601 Da PI: 5.4523

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100029510041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.5	7.3e-09	770	811	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W+ eE el++d + +G++ +++Ia+ + ++t +c+++++k Ote100029510041\|100029510041 770 PWSVEERELFIDKLAIFGKN-FSKIASFLE-HKTMADCIEFYYK 811 8***************99.*****.*********98 PP
2	Myb_DNA-binding	30.3	9.9e-10	984	1024	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE ++++av +G++ ++ I++++ +R+ qck ++ Ote100029510041\|100029510041 984 DWTDEEKSIFIQAVSSYGKD-FTMISECVR-TRSKDQCKIFFS 1024 5***************99.*****.******8775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.14E-14	754	815	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-5	762	816	IPR009057	Homeodomain-like
PROSITE profile	PS51293	18.316	766	817	IPR017884	SANT domain
SMART	SM00717	2.5E-10	767	815	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-6	770	811	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	12.079	980	1031	IPR017884	SANT domain
SMART	SM00717	1.3E-8	981	1029	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.36E-11	982	1031	IPR009057	Homeodomain-like
Pfam	PF00249	8.2E-8	984	1023	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.9E-6	984	1025	IPR009057	Homeodomain-like
CDD	cd00167	6.06E-7	985	1023	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1684 aa Download sequence Send to blast
MFVPCADYFS TLLLGSEFLV EGHGKQGGWP MYPDDAGHGF LPFTSRYGDR NMEDDNFRPF 60 GNRGDGRYFR NSRENRGLLS QRDWRSPSWE PAASSSGPGR PTXXXXXXXX XXXXQKPVEK 120 TESCPDNSSK INGXXXXXXX XXXXDSLPGQ SPSLVKEINE KDGDGTDELV SPIQISNKEN 180 GLGSGDWKPL KWSRSGSLSS RGSGLSHSGS SRSLGLEAET VVDPHPKNAT PVESPAAVCA 240 VSAAPTPSDE TSSRKKPRLG WGEGLAKYEK KKVDGPEEVA TKDGLVVSVS DAEIILPSGN 300 LLDKSPRVAS FSDCTESATP TSVACSSSSG IEEKVSVKAV NVDHDTANWS CSPSAMSQAQ 360 YDGPAFNLEN LDLASIANLS SLINEFVQSV DSSSAETGYV RTTSMNKLFV WKVNILKAVE 420 VTESEIDSLE TELKSLVAAG SASSNLQLGE CRLKPCAEVV AGSSFTTGAV PLQVVSSKAM 480 NFENLPEDEH VSSKDEIDSP GSATSKLTEM LPSGEETFPS EAEECVKGPK RTKRDNFSSL 540 EKCLEDGLSN HDETCFTDDH KVIEASCHGL ASVCDSHSKI DHIYDSILSS NKASANMAME 600 ELNKLLPDQQ RSLDRSTFLS ASSSKSDPSL IKEKFLKKKW SLQFMEKVVT LKFKVLRHFW 660 KEGRIVLIKK LRGKSHKKYD PSHAGFKKNR SSNRTRISYF GGFIRTVPAE EVIEYTNSLL 720 SESPFKPCRT TLKMPALILD KDVRMSRFIS NNALVEDPCA VEKERSMINP WSVEERELFI 780 DKLAIFGKNF SKIASFLEHK TMADCIEFYY KNHKSEHFAR ARKKPGFAKH KKSQSNTYLV 840 ASGKRWNREM NAASLDILGE ASVIVASVND GVESQQKIMS RMFGASSCHK VSTGEDVPLQ 900 RSNSLDMYNS ETVAADVLAG ICGSLSSEAM SSCITSSVDL IDVYEDRKSQ RVGSCMKRPM 960 TPDVTQNVDD ECSDESCGEM DPTDWTDEEK SIFIQAVSSY GKDFTMISEC VRTRSKDQCK 1020 IFFSKARKCL GLDKIQPNVE GNRGASDAGD ACVVQNCPVT EIDGSECRME EDLPPADMKS 1080 SNDTDKVGTP SLEPDSNGCT DKTGPSTLDS SKASEPVVQN FLTGTALVND SPAIDFNING 1140 EEGACGPESE VTTLAVSSKM DSVGVKKGDH DYQPTRMSEA DSNTMASDEH HGEDNGGRRP 1200 SITEDKLENN ELQDNGACST EGTPISSAED ETEPDPQVAG NISHPSVDAH FPTQVGSGCQ 1260 LENDPQACTE KSSPVSSEQN GHIASVESLT LFSVPIKYQR HSSNGALSNS GTNGIFKNDS 1320 QKIVGPVDRQ QHLKDCSRPD PDEFSQILRG YPVSVQTMKE INGDVNRKKH LPLYNVSKHD 1380 EKLHSDRRRD LSLQKCAGQK HQGETQVPFP SHDNSRDHSR PGSGSSSDVE KPSRNGDVKL 1440 FGKILTSSQQ KPDSCVEGKG SDDRNKPSQT LNLRFSGNQN VNLDSSQSKF ACNNYISSES 1500 NPGSYGFWDG NRTNTGFTPF PDSALLLAKY PAAFSNHSMT SVKLDQPPLH GAIRSNDPSL 1560 NGLSVFPSSS SNGVADYQML RNRELPPFSL DMKQPQDVLF SEMQRRNGFD VVSGMQQQSR 1620 GMVGVNVVGR GGLIGQCSGX XXXVSDPVAA IKMHYAKAQN LGMQAGNGVR KDDSWRSNGD 1680 VGKS

Sequence ? help Back to Top

Protein Sequence Length: 1684 aa Download sequence Send to blast

MFVPCADYFS TLLLGSEFLV EGHGKQGGWP MYPDDAGHGF LPFTSRYGDR NMEDDNFRPF  60
GNRGDGRYFR NSRENRGLLS QRDWRSPSWE PAASSSGPGR PTXXXXXXXX XXXXQKPVEK  120
TESCPDNSSK INGXXXXXXX XXXXDSLPGQ SPSLVKEINE KDGDGTDELV SPIQISNKEN  180
GLGSGDWKPL KWSRSGSLSS RGSGLSHSGS SRSLGLEAET VVDPHPKNAT PVESPAAVCA  240
VSAAPTPSDE TSSRKKPRLG WGEGLAKYEK KKVDGPEEVA TKDGLVVSVS DAEIILPSGN  300
LLDKSPRVAS FSDCTESATP TSVACSSSSG IEEKVSVKAV NVDHDTANWS CSPSAMSQAQ  360
YDGPAFNLEN LDLASIANLS SLINEFVQSV DSSSAETGYV RTTSMNKLFV WKVNILKAVE  420
VTESEIDSLE TELKSLVAAG SASSNLQLGE CRLKPCAEVV AGSSFTTGAV PLQVVSSKAM  480
NFENLPEDEH VSSKDEIDSP GSATSKLTEM LPSGEETFPS EAEECVKGPK RTKRDNFSSL  540
EKCLEDGLSN HDETCFTDDH KVIEASCHGL ASVCDSHSKI DHIYDSILSS NKASANMAME  600
ELNKLLPDQQ RSLDRSTFLS ASSSKSDPSL IKEKFLKKKW SLQFMEKVVT LKFKVLRHFW  660
KEGRIVLIKK LRGKSHKKYD PSHAGFKKNR SSNRTRISYF GGFIRTVPAE EVIEYTNSLL  720
SESPFKPCRT TLKMPALILD KDVRMSRFIS NNALVEDPCA VEKERSMINP WSVEERELFI  780
DKLAIFGKNF SKIASFLEHK TMADCIEFYY KNHKSEHFAR ARKKPGFAKH KKSQSNTYLV  840
ASGKRWNREM NAASLDILGE ASVIVASVND GVESQQKIMS RMFGASSCHK VSTGEDVPLQ  900
RSNSLDMYNS ETVAADVLAG ICGSLSSEAM SSCITSSVDL IDVYEDRKSQ RVGSCMKRPM  960
TPDVTQNVDD ECSDESCGEM DPTDWTDEEK SIFIQAVSSY GKDFTMISEC VRTRSKDQCK  1020
IFFSKARKCL GLDKIQPNVE GNRGASDAGD ACVVQNCPVT EIDGSECRME EDLPPADMKS  1080
SNDTDKVGTP SLEPDSNGCT DKTGPSTLDS SKASEPVVQN FLTGTALVND SPAIDFNING  1140
EEGACGPESE VTTLAVSSKM DSVGVKKGDH DYQPTRMSEA DSNTMASDEH HGEDNGGRRP  1200
SITEDKLENN ELQDNGACST EGTPISSAED ETEPDPQVAG NISHPSVDAH FPTQVGSGCQ  1260
LENDPQACTE KSSPVSSEQN GHIASVESLT LFSVPIKYQR HSSNGALSNS GTNGIFKNDS  1320
QKIVGPVDRQ QHLKDCSRPD PDEFSQILRG YPVSVQTMKE INGDVNRKKH LPLYNVSKHD  1380
EKLHSDRRRD LSLQKCAGQK HQGETQVPFP SHDNSRDHSR PGSGSSSDVE KPSRNGDVKL  1440
FGKILTSSQQ KPDSCVEGKG SDDRNKPSQT LNLRFSGNQN VNLDSSQSKF ACNNYISSES  1500
NPGSYGFWDG NRTNTGFTPF PDSALLLAKY PAAFSNHSMT SVKLDQPPLH GAIRSNDPSL  1560
NGLSVFPSSS SNGVADYQML RNRELPPFSL DMKQPQDVLF SEMQRRNGFD VVSGMQQQSR  1620
GMVGVNVVGR GGLIGQCSGX XXXVSDPVAA IKMHYAKAQN LGMQAGNGVR KDDSWRSNGD  1680
VGKS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	4e-17	734	818	9	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	4e-17	734	818	9	93	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084346.1	0.0	uncharacterized protein LOC105166619
TrEMBL	A0A4D8Z5X4	0.0	A0A4D8Z5X4_SALSN; Uncharacterized protein
STRING	Migut.F01767.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5904	23	32