PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100030700021

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

YABBY

Protein Properties

Length: 185aa MW: 21048.1 Da PI: 9.1133

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100030700021	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	184	8.3e-57	2	157	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksn 85 + seq+ y+ CnfCn +lavsvP +sl+ vvtvrCGhC++l +vn+a a ++ + ++ ++ + + +++ Ote100030700021\|100030700021 2 DVSEQLRYIPCNFCNIVLAVSVPCSSLLDVVTVRCGHCSNLWTVNMAAAP--FPSLVQ-----PPSSCQDFQAPNCIPTEY 75 579*************************************97776554..454444.....233444444433333333 PP YABBY 86 vekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 k + s+s+ ++k++ + ++ p++ ++rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+i Ote100030700021\|100030700021 76 --KVDLGSSSKWNYKIQPSITK-KPEPRIANRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHI 153 ..33344444444455444433.34445689********************************************** PP YABBY 167 hfgl 170 hfgl Ote100030700021\|100030700021 154 HFGL 157 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.9E-66	3	157	IPR006780	YABBY protein
SuperFamily	SSF47095	1.7E-8	93	150	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.3E-4	104	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MDVSEQLRYI PCNFCNIVLA VSVPCSSLLD VVTVRCGHCS NLWTVNMAAA PFPSLVQPPS 60 SCQDFQAPNC IPTEYKVDLG SSSKWNYKIQ PSITKKPEPR IANRPPEKRQ RVPSAYNQFI 120 KEEIQRIKAN NPDISHREAF STAAKNWAHF PHIHFGLMLE SNSQPKLNEG LEKHQFRRAS 180 MRDKL

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078402.1	3e-94	axial regulator YABBY 5
Swissprot	Q8GW46	1e-77	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A0X9R6C8	1e-108	A0A0X9R6C8_MENSP; YABBY family protein 6
STRING	VIT_11s0016g05590.t01	9e-91	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]