PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100030700031

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

YABBY

Protein Properties

Length: 169aa MW: 19093.8 Da PI: 8.4917

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100030700031	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	184.1	7.8e-57	2	157	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksn 85 + seq+ y+ CnfCn +lavsvP +sl+ vvtvrCGhC++l +vn+a a ++ + ++ ++ + + +++ Ote100030700031\|100030700031 2 DVSEQLRYIPCNFCNIVLAVSVPCSSLLDVVTVRCGHCSNLWTVNMAAAP--FPSLVQ-----PPSSCQDFQAPNCIPTEY 75 579*************************************97776554..454444.....233444444433333333 PP YABBY 86 vekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 k + s+s+ ++k++ + ++ p++ ++rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+i Ote100030700031\|100030700031 76 --KVDLGSSSKWNYKIQPSITK-KPEPRIANRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHI 153 ..33344444444455444433.34445689********************************************** PP YABBY 167 hfgl 170 hfgl Ote100030700031\|100030700031 154 HFGL 157 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.4E-66	3	157	IPR006780	YABBY protein
SuperFamily	SSF47095	1.44E-8	93	150	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.1E-4	104	151	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MDVSEQLRYI PCNFCNIVLA VSVPCSSLLD VVTVRCGHCS NLWTVNMAAA PFPSLVQPPS 60 SCQDFQAPNC IPTEYKVDLG SSSKWNYKIQ PSITKKPEPR IANRPPEKRQ RVPSAYNQFI 120 KEEIQRIKAN NPDISHREAF STAAKNWAHF PHIHFGLMLE SNSQPKLNE

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011078402.1	5e-88	axial regulator YABBY 5
Swissprot	Q8GW46	9e-78	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A4D9AY68	1e-108	A0A4D9AY68_SALSN; Uncharacterized protein
STRING	VIT_11s0016g05590.t01	1e-84	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]