PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100030740011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

bHLH

Protein Properties

Length: 233aa MW: 26283.9 Da PI: 9.6826

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100030740011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.2e-10	80	127	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ah+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Ote100030740011\|100030740011 80 AHSLAERVRREKISERMKVLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 127 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.63E-18	74	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.45E-11	74	131	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.3E-18	76	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.878	76	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-7	80	127	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.0E-11	82	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MVQDSRENST VSEQIFTPPN SRKRKSAAKG KAKEASANVP EKCSESSMKR SKSEXXXXXX 60 XXXXXXYIHV RARRGQATDA HSLAERVRRE KISERMKVLQ DLVPGCNKVT GKAVMLDEII 120 NYVQSLQRQV EFLSMKLATV NPRMEFNVEA ALMSKDVMFQ SRVSLPHNIY PSNGYSVVPN 180 ETPASRHQLD SFGDATSKIC SFWEDDLQSI VQMGFGQQNF QGIIPTAQMK VEL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00376	DAP	Transfer from AT3G23690	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011084194.2	4e-94	transcription factor bHLH78
Swissprot	Q9LK48	1e-61	BH077_ARATH; Transcription factor bHLH77
TrEMBL	A0A0H3Y7G3	1e-102	A0A0H3Y7G3_SALMI; Basic helix-loop-helix transcription factor
STRING	XP_009788675.1	2e-80	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1057	23	83

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]