PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100031230222

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 374aa MW: 41715.6 Da PI: 6.6778

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100031230222	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.8	2.2e-32	187	241	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWt++LH+rFve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR Ote100031230222\|100031230222 187 KSRIRWTQDLHDRFVECVNRLGGPDKATPKQILKLMDTEGLTIFHVKSHLQKYRN 241 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.09E-17	184	241	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.2E-29	184	242	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.434	184	244	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.4E-25	187	242	IPR006447	Myb domain, plants
Pfam	PF00249	3.9E-8	191	240	IPR001005	SANT/Myb domain
Pfam	PF14379	5.8E-18	273	320	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MKGIQHNLGS YSGDFPDISP QSYPAQQQSA SNQQHTRWNA GTIIGRIGSP AAAFCATEIA 60 MGLSHYDFPQ SDNLYPTKQT FHPSATHGLF GGSPARNEAD SQNYHGGSYR NHFINPSERE 120 QILHLKNKLL GDLDVSDGRS PSVSLDANQE LEVPQNLYAP HLLQFGRCLS SASMNSSSSP 180 AAVTSHKSRI RWTQDLHDRF VECVNRLGGP DKATPKQILK LMDTEGLTIF HVKSHLQKYR 240 NAKYMPESVE AAAKAEKKTN MNNEAQIDIK TGVQLKEALQ LQLDVQMRLH EQLEIQQNLQ 300 VRIEEQSKQL KMMFDQQQKT TTNLAETNHA NNICPNANSL STTVEDPEIL VLDGSDDDVV 360 MLSKISQKKE GNFY

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MKGIQHNLGS YSGDFPDISP QSYPAQQQSA SNQQHTRWNA GTIIGRIGSP AAAFCATEIA  60
MGLSHYDFPQ SDNLYPTKQT FHPSATHGLF GGSPARNEAD SQNYHGGSYR NHFINPSERE  120
QILHLKNKLL GDLDVSDGRS PSVSLDANQE LEVPQNLYAP HLLQFGRCLS SASMNSSSSP  180
AAVTSHKSRI RWTQDLHDRF VECVNRLGGP DKATPKQILK LMDTEGLTIF HVKSHLQKYR  240
NAKYMPESVE AAAKAEKKTN MNNEAQIDIK TGVQLKEALQ LQLDVQMRLH EQLEIQQNLQ  300
VRIEEQSKQL KMMFDQQQKT TTNLAETNHA NNICPNANSL STTVEDPEIL VLDGSDDDVV  360
MLSKISQKKE GNFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-22	187	244	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-22	187	244	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-22	187	244	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-22	187	244	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-22	187	244	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-22	187	244	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-22	187	244	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-22	187	244	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011075159.1	1e-135	myb family transcription factor PHL5 isoform X1
TrEMBL	A0A4D9BMU3	1e-147	A0A4D9BMU3_SALSN; Two-component response regulator ARR-B family
STRING	Migut.J01825.1.p	1e-114	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2491	24	58