PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100031500021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB
Protein Properties Length: 455aa    MW: 49879.6 Da    PI: 6.6938
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100031500021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-163075147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  rg+W+++Ed +l  +v ++G ++W++Iar ++ gR++k+c++rw + 
  Ote100031500021|100031500021 30 RGPWSPQEDAILSGLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 75
                                  89******************************.***********985 PP
2Myb_DNA-binding47.63.9e-15119157747
                                   HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   eEd +++da++ +G++ W++Ia+ ++ gRt++ +k++w++ 
  Ote100031500021|100031500021 119 EEDRIILDAHAVYGNK-WASIAKLLP-GRTDNAIKNHWNST 157
                                   9***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5772580IPR017930Myb domain
SuperFamilySSF466891.54E-262777IPR009057Homeodomain-like
SMARTSM007172.2E-132978IPR001005SANT/Myb domain
PfamPF002491.3E-153075IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-193078IPR009057Homeodomain-like
CDDcd001677.52E-133274No hitNo description
SuperFamilySSF466891.54E-26111154IPR009057Homeodomain-like
PROSITE profilePS5129420.124112162IPR017930Myb domain
SMARTSM007179.0E-10112160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-18118159IPR009057Homeodomain-like
PfamPF002495.3E-13118157IPR001005SANT/Myb domain
CDDcd001672.95E-11119158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MNEEEEEVRE ESVQVEECGG VGAAAKGKVR GPWSPQEDAI LSGLVSKFGA RNWSLIARGI  60
PGRSGKSCRL RWCNQLDPXX XXXXXXXXXX XILSQSVFKF GTSAGYKVIL PNSHLRSYEE  120
DRIILDAHAV YGNKWASIAK LLPGRTDNAI KNHWNSTLRR KCVKRTGSTP AADQKLSDTC  180
TDWMKASIEE TPSGPPPNSF KSLEIAEMAT MAYQPKSSTN KAQTSANCHI LEPNLPLRSS  240
DTEHMRVIDE DQPKQYEGNT ITSASRYFLK PSPTPAENHR HSDKGTQLVV SHPVAKFGAF  300
NVYNSSSHDA TLSGTVLLQG SLVQASELDS GLWKFVDGEH IIPSQCGHGC CTASAENTCH  360
RSLLGPEFVE YKEVPSLSSP EFISVVTDLN NIAWIRSGLE NTGRPSGEGD GDSLMLHARN  420
VEQNVRNEQF VVGGRNIFSS ITREAGSTQM TMPAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-31291616107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076754.11e-141transcription factor MYB25
TrEMBLA0A059PSL51e-155A0A059PSL5_SALMI; MYB-related transcription factor