PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100031630071
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 73aa    MW: 8603.83 Da    PI: 10.4064
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100031630071genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93e-101348137
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                                  +g W+++Ed++l d++ + G+g+W++++   g  +t+
  Ote100031630071|100031630071 13 KGLWSPDEDQRLRDYIMRNGNGCWSSVPINAG-WLTE 48
                                  678***************************99.8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.0E-10842IPR009057Homeodomain-like
SuperFamilySSF466897.26E-7844IPR009057Homeodomain-like
PROSITE profilePS500906.075850IPR017877Myb-like domain
PfamPF002491.2E-81348IPR001005SANT/Myb domain
CDDcd001670.004691639No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MRMGEKPKKK HRKGLWSPDE DQRLRDYIMR NGNGCWSSVP INAGWLTEER KELQTEVDQL  60
FKARAKAWGI HHG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015878037.16e-18transcription factor LAF1-like
RefseqXP_015878099.16e-18transcription factor LAF1-like
TrEMBLA0A426YY935e-20A0A426YY93_ENSVE; Uncharacterized protein (Fragment)
TrEMBLA0A444GEQ85e-20A0A444GEQ8_ENSVE; Uncharacterized protein (Fragment)
STRINGEMJ223457e-16(Prunus persica)
STRINGXP_002510799.17e-17(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154