PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100031790061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 547aa    MW: 59623.5 Da    PI: 7.0393
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100031790061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.23e-27205266260
                                   --SS-EEEEEEE--TT-SS-EEEE....EE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYY....rCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                   +DgynWrKYGqK vkgsefprsYY    +Ct+++C+vkk  ers   ++++ei Y+g+H+h+k
  Ote100031790061|100031790061 205 EDGYNWRKYGQKLVKGSEFPRSYYxxxxKCTYPNCEVKKIFERSP-SGQITEIAYKGSHDHPK 266
                                   7***********************99999****************.9**************85 PP
2WRKY107.47e-34377435159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+v+g+++prsYY+Ct+agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Ote100031790061|100031790061 377 LDDGYRWRKYGQKVVRGNPNPRSYYKCTHAGCPVRKHVERASHDPKAVITTYEGKHNHD 435
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-22194267IPR003657WRKY domain
PROSITE profilePS5081120.369199267IPR003657WRKY domain
SuperFamilySSF1182902.22E-20201267IPR003657WRKY domain
SMARTSM007746.3E-28204266IPR003657WRKY domain
PfamPF031062.4E-19205265IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-38362437IPR003657WRKY domain
SuperFamilySSF1182908.63E-30369437IPR003657WRKY domain
PROSITE profilePS5081138.595372437IPR003657WRKY domain
SMARTSM007741.2E-39377436IPR003657WRKY domain
PfamPF031061.7E-26378435IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MENHSHSQPH VTHGGGSSNG ARYRLMSPAM LPISSSTCIT IPPSLSPTSF LDSPLLLSDI  60
KAEPSPTTGS FLKPQLMQTS GVNVAVPSEK NFTSGNTADE STISEFEFRF HTGVSSTSGL  120
SSVGNSIPEG MNRNGQVPHQ DKRYSQSAPL SSLASQSFIV AGRDSSAYDN IDELNQGGQS  180
STGFQASVSD HKDSSTSVSA ERTSEDGYNW RKYGQKLVKG SEFPRSYYXX XXKCTYPNCE  240
VKKIFERSPS GQITEIAYKG SHDHPKPQSA HRHNPGALLC IQEDKLDKGL SLSGQEDKAN  300
ANNMEQSGSP MLSPLQGFEE GIDGSGSQFQ GIXXXXXXXX PFLKRRKMED DIDVTPVVKP  360
IREPRVVVQT VSEVDILDDG YRWRKYGQKV VRGNPNPRSY YKCTHAGCPV RKHVERASHD  420
PKAVITTYEG KHNHDVPTAR NSSHEFPSKM RAQDSTSCIS LDLGVGIGRA GENKSDEGTS  480
MESEAAGNQI GSTATXXXXX XXXXXAVRYD VVNGGLHVYG DRVEAHNFQT PPSNQCPQNL  540
GRILMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36194437277Probable WRKY transcription factor 4
2lex_A1e-36194437277Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095503.10.0probable WRKY transcription factor 20
TrEMBLA0A0D5Y9D00.0A0A0D5Y9D0_SALMI; WRKY protein
STRINGMigut.M01679.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40252344