PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100032270061
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-X1
Protein Properties Length: 1056aa    MW: 114587 Da    PI: 8.1802
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100032270061genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.81.5e-05276294119
                      zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                   CG+H C++ CH GpC+pC+
  Ote100032270061|100032270061 276 CGRHHCGRVCHVGPCDPCQ 294
                                   ******************6 PP
2zf-NF-X120.31.2e-06340357118
                      zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                                   CG+H Cq++CH+GpC++C
  Ote100032270061|100032270061 340 CGNHFCQETCHPGPCGEC 357
                                   ****************** PP
3zf-NF-X1193e-06497515119
                      zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                   CG+H+C++lCH G CppC 
  Ote100032270061|100032270061 497 CGQHSCISLCHSGHCPPCL 515
                                   ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd060088.52E-5198259No hitNo description
SMARTSM004380.025221239IPR000967Zinc finger, NF-X1-type
PfamPF014223.1223238IPR000967Zinc finger, NF-X1-type
CDDcd060081.16E-10266314No hitNo description
SMARTSM004380.0014276295IPR000967Zinc finger, NF-X1-type
PfamPF014220.0012276293IPR000967Zinc finger, NF-X1-type
CDDcd060081.56E-7330373No hitNo description
SMARTSM004382.1E-5340359IPR000967Zinc finger, NF-X1-type
PfamPF014227.7E-5340357IPR000967Zinc finger, NF-X1-type
CDDcd060087.07E-12388436No hitNo description
PfamPF014220.0035392415IPR000967Zinc finger, NF-X1-type
SMARTSM004380.016398417IPR000967Zinc finger, NF-X1-type
PfamPF0142284456462IPR000967Zinc finger, NF-X1-type
CDDcd060082.21E-7487530No hitNo description
SMARTSM004384.0E-4497516IPR000967Zinc finger, NF-X1-type
PfamPF014228.2E-5497514IPR000967Zinc finger, NF-X1-type
CDDcd060086.03E-5544592No hitNo description
SMARTSM004380.045554572IPR000967Zinc finger, NF-X1-type
PfamPF014229.9554571IPR000967Zinc finger, NF-X1-type
SMARTSM004380.008607637IPR000967Zinc finger, NF-X1-type
PfamPF014220.023607622IPR000967Zinc finger, NF-X1-type
PfamPF0142225639665IPR000967Zinc finger, NF-X1-type
SMARTSM004380.027646667IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3304.2E-4855898IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1056 aa     Download sequence    Send to blast
MSSEQNRRRE NNNYRPRHNN LSRNNRREWV PRGSAPVVAA VQVPPASVVG ASQNENGNDG  60
ELVDRPVRPV VPNRNRTHGG SRGNPGXXXX XXKGRKRRWR GSIIVKTMLG CRRGSAPIWS  120
CSSCYSIFHL SCIKKWARAP TSIDLSAEKN QGSNWRCPGC QSVQLMSAKE IRYTCFCSKR  180
TDPPSDLYXX XXXXXXXCGE PCGKPLEREL PGSGMSGEDM CPHSCVLQCH PGPCPPCKAF  240
APPCRCPCGK KVITTRCSDR KSVLTCGQRC DKLLDCGRHH CGRVCHVGPC DPCQVLVDAS  300
CFCKKKIEVL LCGEMIVKGE IRGQDGLFSC NLTCENKLKC GNHFCQETCH PGPCGECELL  360
PEKIKACCCG KTSLNEDRKS CLDPIPTCSQ ICGKTLPCKL HYCQNVCHSG PCVPCNVLVT  420
QKCRCGSTSR TVECYRTGPD GEKFTCDRPC GQKKSCGRHR CSXXXXRCCP LSNSSNSAMV  480
DGNPHLCTMP CEKKLRCGQH SCISLCHSGH CPPCLETIFT DLTCACGRTS IPPPLPCGTP  540
PPSCQYPCSV PQPCGHPSSH SCHFGDCPPC TVPIPKECVG GHVVLRSIPC GSKDIRCNKL  600
CGKTRQCGLH ACSRTCHPPP CDSSAASSSS LRTSCRQTCG APRRDCRHTC MAICHPANPC  660
PDVRCEFPVT ITCSCGRINA TVPCDAGGGS GGYSADTVLE ASTIHKLPVP LQPAEENGQR  720
IPLGQRKLMC DDECTKVERK KVLADAFGVT PPSLETLHFG DTACVSEVLS DLLRRDPKWV  780
LAVEERCRWK LSVNAAGWEP KRFVIVHVTP KSKPPARILG VKSCNTSSML QPPIFDHLVD  840
MDPRLVVGLF DLPREGDISA LVLRFGGECE LVWLNDKNAL AVFSDPGRAA TAMRRLEQGS  900
VYYGAVSVPQ NGGASTVSSG ASAWGSASTT SKDAASLKGN PWKKVVLQDS EFKESSWGAE  960
EWTANAADPK LHHWKEKEVP IPASSNRWSV LESGSSSKSS DASAKIENLQ KPTETSSSTS  1020
SASTRDESGL KLPLQQEGGS SEMSGDVVDD WEKAYD
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083338.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A4D9AJG20.0A0A4D9AJG2_SALSN; Transcriptional repressor NF-X1
STRINGMigut.D01221.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428