PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100032450101
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 626aa    MW: 68863.2 Da    PI: 8.4153
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100032450101genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.91.5e-26350408160
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                   ldDgynWrKYGqK vkg++f rsYY+Ct+++C++kk+vers+ d+   ++ Y g+H+h+k
  Ote100032450101|100032450101 350 LDDGYNWRKYGQKCVKGNKFIRSYYKCTYPNCQAKKQVERSH-DGCKSDTNYLGNHHHQK 408
                                   59****************************************.***************85 PP
2WRKY104.46e-33522580159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ++Dgy+WrKYGqK vkg+++prsYYrC+ agC vkk+ver++++pk+v++tYeg+Hnh+
  Ote100032450101|100032450101 522 VNDGYRWRKYGQKLVKGNPNPRSYYRCSNAGCLVKKHVERASHNPKLVITTYEGTHNHD 580
                                   58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-23343410IPR003657WRKY domain
PROSITE profilePS5081122.079345409IPR003657WRKY domain
SuperFamilySSF1182901.01E-21348409IPR003657WRKY domain
SMARTSM007747.2E-29350408IPR003657WRKY domain
PfamPF031061.1E-19351407IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-34508582IPR003657WRKY domain
SuperFamilySSF1182906.54E-29514582IPR003657WRKY domain
PROSITE profilePS5081135.875517582IPR003657WRKY domain
SMARTSM007741.1E-38522581IPR003657WRKY domain
PfamPF031063.4E-26523580IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MGAVSSKRVA SETGELEKRA ITNLPSATLN SNLEAASVTR DKIMTEMPHT KSHSDVKKEK  60
DSCNEPEREP SKESQKQNSV TTQEQYLNHQ RQSSGITHDF PESHGEERIG PCKNENDSDL  120
LTKIPNSNPG IPAKESNPLP VSHVTEEFSK IPKDEPADLH LSQNPDSGVK TSSMSDEERT  180
TEKMVMVGGT SPSVRSVNGV PASLSNEQIL NMSSQPGKGL EKLQPRRNPD AGGCSSQLDQ  240
VTIKSGHTEK KSVSKEEPQP VKSQPANHAL KRKEEKLANS KGQSVSQNSA QASSLSIGVH  300
VPHLGQESCT FSTKLEKVEK LQPRRNLDLV IQDSKSDVET TPSKTPDKRL DDGYNWRKYG  360
QKCVKGNKFI RSYYKCTYPN CQAKKQVERS HDGCKSDTNY LGNHHHQKPQ QGPQVTSTLQ  420
VRTPETPVAS TAKSNAEAIT KHDSLEQHMA SRQTSPQSTV IRSAEGLPGA IPCSNNSTRD  480
LDDCPDSKRQ KRETSSTDED LVNRSNTDSR HVVQTLSEVD LVNDGYRWRK YGQKLVKGNP  540
NPRSYYRCSN AGCLVKKHVE RASHNPKLVI TTYEGTHNHD TPTSRTVSQS IAKGDANMMS  600
PNGESSSKPE DNGPVSLEMA VHVSAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-32350582877Probable WRKY transcription factor 4
2lex_A2e-32350582877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100622.10.0WRKY transcription factor 1 isoform X1
TrEMBLA0A0D5Y9B20.0A0A0D5Y9B2_SALMI; WRKY protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45582242