PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100032460001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 216aa    MW: 24293.4 Da    PI: 4.8783
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100032460001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-125288139
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                                  rg++T++E+  ++d+++ lG++ W+ Ia++++ gRt+++
  Ote100032460001|100032460001 52 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNE 88
                                  89********************.*********.****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.681146IPR017877Myb-like domain
SuperFamilySSF466898.48E-173288IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-123258IPR009057Homeodomain-like
PROSITE profilePS5129417.4694799IPR017930Myb domain
SMARTSM007171.8E-75199IPR001005SANT/Myb domain
PfamPF002493.0E-115288IPR001005SANT/Myb domain
CDDcd001677.88E-95488No hitNo description
Gene3DG3DSA:1.10.10.601.1E-145988IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MISLPVTYAC SLMLKWIGLR RCSPGPKLVG LHRCGKSCRL RWINYLRPDL KRGSFTEQEE  60
RTIIDVHRIL GNRWAQIAKH LPGRTDNETL VSNILNPHQS GAQNSMLLSR ESTPMVSSSS  120
GFVMMNENCT NWASTGDQFG LEQASEQQNC GVEVYKVDNN PVDELILQST VDEQVGNIAF  180
DGFDFEFVES AFIPPQTSYN CSLTSMEDQL AWDIVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-1933874094B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A059PRE63e-45A0A059PRE6_SALMI; MYB-related transcription factor
STRINGXP_008226015.12e-39(Prunus mume)