PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100032740031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family ERF
Protein Properties Length: 135aa    MW: 15340 Da    PI: 5.6813
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100032740031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.31.4e-211263256
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  +y+G+r+++ +g+++AeIrdp++ng  +r +lg+f+taeeAa+a+++a+ +l+g+
  Ote100032740031|100032740031 12 KYRGIRRRP-WGKFAAEIRDPKQNG--ARLWLGTFDTAEEAARAYDRAAYALRGH 63
                                  8********.***********9998..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-151263IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-321271IPR001471AP2/ERF domain
CDDcd000182.80E-211272No hitNo description
SuperFamilySSF541717.85E-241271IPR016177DNA-binding domain
PROSITE profilePS5103224.8821270IPR001471AP2/ERF domain
SMARTSM003801.8E-361276IPR001471AP2/ERF domain
PRINTSPR003671.1E-111324IPR001471AP2/ERF domain
PRINTSPR003671.1E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MEAEKGSKKD HKYRGIRRRP WGKFAAEIRD PKQNGARLWL GTFDTAEEAA RAYDRAAYAL  60
RGHQAILNFP NDGQYSNSSV HSRITGESSS DSMEPVAIEG MSVGPEDEII EIEYFDNKLL  120
EDLLETQIRG QDRHK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2912721474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022872990.13e-46ethylene-responsive transcription factor ERF098-like
RefseqXP_023906346.13e-46ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC58e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A4D9BR509e-45A0A4D9BR50_SALSN; EREBP-like factor
STRINGGorai.007G145700.15e-45(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]