PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100032770031
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GATA
Protein Properties Length: 194aa    MW: 21693.6 Da    PI: 8.9777
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100032770031genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.51.4e-16152189136
                          GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
                                   C++Cg+++  Tp++R+gp+g+k+LCnaCGl ++ kg++
  Ote100032770031|100032770031 152 CTHCGVSSngTPMMRKGPSGSKSLCNACGLSWANKGVM 189
                                   ***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101711.19192134IPR010402CCT domain
PfamPF062031.9E-1292134IPR010402CCT domain
SuperFamilySSF577161.33E-10144193No hitNo description
SMARTSM004011.2E-6146193IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.077146194IPR000679Zinc finger, GATA-type
CDDcd002021.68E-10151190No hitNo description
Gene3DG3DSA:3.30.50.102.1E-14151190IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440152179IPR000679Zinc finger, GATA-type
PfamPF003202.4E-14152189IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MSNSEMNTSN HDHPSLTATD ESVGNSAADD QSQLATCNAP CHVTLSFEDK VFTFDRVPCE  60
KALFALLILG GYEPRPSNAR ATPHIKSNDP KRQECLNRYY QKENRRCFEK KIRYSVRREV  120
ALKIHRKKGE FAPKDVGETS RIVMETSEIT TCTHCGVSSN GTPMMRKGPS GSKSLCNACG  180
LSWANKGVMR YINR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088777.13e-57GATA transcription factor 25-like
TrEMBLA0A068TXX68e-46A0A068TXX6_COFCA; Uncharacterized protein
STRINGMigut.B00065.1.p5e-45(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1979333