PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100032970041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family S1Fa-like
Protein Properties Length: 81aa    MW: 9075.73 Da    PI: 10.4216
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100032970041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA130.54.5e-411481370
                          S1FA  3 vakveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                                  v++v+++ lnPGlivllvvgglll flvgny+ly+yaqk+lPPr+kkP+skkk+k+e+lkqG+++PGe
  Ote100032970041|100032970041 14 VKNVDSQELNPGLIVLLVVGGLLLSFLVGNYMLYTYAQKTLPPRRKKPISKKKMKKERLKQGISAPGE 81
                                  5678999************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046897.2E-391781IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MDGDFDVPPS FDRVKNVDSQ ELNPGLIVLL VVGGLLLSFL VGNYMLYTYA QKTLPPRRKK  60
PISKKKMKKE RLKQGISAPG E
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104121.21e-27DNA-binding protein S1FA
RefseqXP_024026346.11e-27DNA-binding protein S1FA
SwissprotQ7XLX66e-14S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLW9SCA32e-24W9SCA3_9ROSA; DNA-binding protein S1FA1
STRINGXP_010104121.14e-25(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31742249
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]