PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100034300051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 380aa    MW: 41903.4 Da    PI: 8.5418
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100034300051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.99e-33104160259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   +DgynWrKYGqK+vk se+prsYY+Ct+++Cpvkkkvers  d+++ eitY+g+Hnh+
  Ote100034300051|100034300051 104 NDGYNWRKYGQKQVKASECPRSYYKCTHPNCPVKKKVERSL-DGHISEITYKGQHNHD 160
                                   8****************************************.***************7 PP
2WRKY106.71.2e-33274332159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYYrCt+agC+v+k+ver++ dpk v++tYeg+Hnh+
  Ote100034300051|100034300051 274 LDDGYKWRKYGQKVVKGNPHPRSYYRCTYAGCNVRKHVERASADPKSVITTYEGKHNHD 332
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.2E-2996162IPR003657WRKY domain
SuperFamilySSF1182901.07E-25100162IPR003657WRKY domain
SMARTSM007744.8E-36103161IPR003657WRKY domain
PROSITE profilePS5081123.101104162IPR003657WRKY domain
PfamPF031061.1E-24104160IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-36260334IPR003657WRKY domain
SuperFamilySSF1182906.41E-30266334IPR003657WRKY domain
PROSITE profilePS5081137.86269334IPR003657WRKY domain
SMARTSM007741.0E-39274333IPR003657WRKY domain
PfamPF031061.3E-26275332IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MVPPGLSPSG LLSPLQSPFG MSHQQALAHV TAQAALSQSF AQMQAEFHHS SSSEAAPNHS  60
SSTHTEAPMQ QTNPPSSDPD YSKKELTDFT QSIKSTAYGD KPANDGYNWR KYGQKQVKAS  120
ECPRSYYKCT HPNCPVKKKV ERSLDGHISE ITYKGQHNHD PPKLNKREKD SSVLDATTNV  180
QVNPVFAAED RTERLNKAVF VNSDPSSFPT TSQQSLEPCA VANHKVEAKD SVIVVNDDAD  240
EPTVKRRSLD NGQSVAAGSE SKIVLQTRSE VDLLDDGYKW RKYGQKVVKG NPHPRSYYRC  300
TYAGCNVRKH VERASADPKS VITTYEGKHN HDIPMGKHGS SSQATAMQRV VAKNHSERSS  360
YGSQDQIPTT LQLKEEQIVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-38104334177Probable WRKY transcription factor 4
2lex_A2e-38104334177Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085706.11e-161probable WRKY transcription factor 4 isoform X1
SwissprotQ9XI905e-97WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0D5Y9A70.0A0A0D5Y9A7_SALMI; WRKY protein
STRINGMigut.H00670.1.p1e-141(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]