PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100034430051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 314aa    MW: 35891 Da    PI: 7.5521
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100034430051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30147205259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +D ++WrKYGqK++kgs++pr+YYrC+++ gC+++k+ver+++dp ++++tY+ +Hnh+
  Ote100034430051|100034430051 147 SDVWSWRKYGQKPIKGSPYPRGYYRCSTSkGCMARKQVERNRSDPGMFIVTYTAKHNHP 205
                                   79************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-31135207IPR003657WRKY domain
PROSITE profilePS5081135.462141207IPR003657WRKY domain
SuperFamilySSF1182901.31E-26141207IPR003657WRKY domain
SMARTSM007742.2E-36146206IPR003657WRKY domain
PfamPF031061.1E-25148205IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEDDWDLHAX XXXXXXXXXX XXXXXXXXXX XATKPYQTLQ QDYDLSTCCF QDLLEPRRNS  60
FFQNELHDLY KPFFPNSETQ FSLPISPLSR LGKSQDPPRE IVKQLPQKQQ SFSVSTGSKT  120
HSPTPRSKRR KSHSKRVCHV AAENLSSDVW SWRKYGQKPI KGSPYPRGYY RCSTSKGCMA  180
RKQVERNRSD PGMFIVTYTA KHNHPMPTHR XXXXXXXXXX TTRQKPAETA VEPHKPFCSP  240
ELSPPRDKMD SSREDLADAE DDDDELSVSK MALDDDFFSG LEDFPAGDCT DGHFPSSFQF  300
PWRSTIATTT AGGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-20131208280Disease resistance protein RRS1
5w3x_D4e-20131208280Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092990.11e-115WRKY transcription factor 22
TrEMBLA0A142CCY41e-106A0A142CCY4_9LAMI; WRKY transcription factor
STRINGMigut.B01797.1.p2e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457