PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100035610021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family GRAS
Protein Properties Length: 160aa    MW: 18214 Da    PI: 7.3882
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100035610021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS90.52.7e-28291284374
                          GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                                   +vE+++l+r+i n++aceg er+er e  +kWr+r+++aGFk+ p+s ++  +++ l+++++++ ++v ee+g l +gW++
  Ote100035610021|100035610021   2 NVEKHCLARDIINIIACEGVERIERYEVSGKWRSRMMMAGFKACPISRNVRGEIEKLVEQYSNR-FKVSEEEGGLRFGWEE 81 
                                   79************************************************************77.**************** PP

                          GRAS 365 rpLvsvSaWr 374
                                   ++L++ SaWr
  Ote100035610021|100035610021  82 KTLIVSSAWR 91 
                                   *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098515.708172IPR005202Transcription factor GRAS
PfamPF035149.5E-26291IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MNVEKHCLAR DIINIIACEG VERIERYEVS GKWRSRMMMA GFKACPISRN VRGEIEKLVE  60
QYSNRFKVSE EEGGLRFGWE EKTLIVSSAW RNSDVGIEHL TLFSEDELVH QVWRGGQYTL  120
RGASKAATLA LVCIPFVPKN RPTMGEVVKA LEQLQDTISL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022879081.17e-44scarecrow-like protein 1
RefseqXP_022879082.17e-44scarecrow-like protein 1
RefseqXP_022879083.17e-44scarecrow-like protein 1
RefseqXP_022879084.17e-44scarecrow-like protein 1
SwissprotQ9SDQ36e-35SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A4D9C2W41e-46A0A4D9C2W4_SALSN; Uncharacterized protein
STRINGVIT_04s0044g01370.t013e-39(Vitis vinifera)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]