PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100035770051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family SBP
Protein Properties Length: 357aa    MW: 39241.8 Da    PI: 8.4314
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100035770051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP73.63.3e-2393147155
                                   --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT- CS
                           SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsef 55 
                                   +C v+gC++dls+ keyh+rhkvC+vhsk++vv+v+g++qrfCqqCs  h + +f
  Ote100035770051|100035770051  93 VCIVHGCNKDLSSSKEYHKRHKVCDVHSKTAVVIVNGVRQRFCQQCSSNHLVADF 147
                                   6***************************************************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.1E-2488148IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.71791163IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-2292148IPR004333Transcription factor, SBP-box
PfamPF031108.1E-1894148IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MKENSVLHAQ FLKNSLSDAD CDSGGSLLSN STIMNSSAKF DKNSSSLATG TIDEVLIAEL  60
KVESPRELKG GSVSADESAK RARTANLPSQ KPVCIVHGCN KDLSSSKEYH KRHKVCDVHS  120
KTAVVIVNGV RQRFCQQCSS NHLVADFTCW QSLIMVNGVV VSVLLATMSV GESLNWKLTL  180
VCCSFPQILE KNKHRLSTRV DLQNGKILAI SFNHTMHLVL LVTYSTFYGT DSYKKSLFFS  240
KHLHCNELLK FGSSPPPPLL QHNRSKYCPS SPLSVLELSA ITNSSCAPSL LSAQSQSSFS  300
HPTTVYPPSI NPNTSKSGAN TVNLLELSLH LQRVEHEKQS EQVMEKGIFS DTEHLMY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A2e-1594147659squamosa promoter-binding protein-like 12