PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100036050021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 245aa    MW: 27296.6 Da    PI: 6.933
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100036050021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00051153175123
                                   EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                   ++C++Cg  F +   L  H+r+H
  Ote100036050021|100036050021 153 HECSICGAEFASGQALGGHMRRH 175
                                   78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.18E-5150177No hitNo description
PROSITE profilePS501579.64153180IPR007087Zinc finger, C2H2
PfamPF139121.0E-12153177IPR007087Zinc finger, C2H2
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MKTQISDEFL ASHDQMILKG KRTKRLRPSS SASSSAGDFN SPTTSTSTEE DEDLANCLIL  60
LAQGGSQPHT QFNSPIYAYE CKTCSRXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXGNKP KIHECSICGA EFASGQALGG HMRRHRSVPT  180
ARSAGDSTSQ DDHHVVAKAR NMLALDLNLP APPEDDRREA EFRAFSSNQQ PPLVFSAVAL  240
VDCHY
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480