PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100037890011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

MIKC_MADS

Protein Properties

Length: 231aa MW: 26723.5 Da PI: 9.5047

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100037890011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.6	1.6e-28	33	83	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrng++KKA+EL vLCda+++++++sst+kl+ey+s Ote100037890011\|100037890011 33 KKIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKISILMISSTQKLHEYIS 83 68***********************************************86 PP
2	K-box	49	2.7e-17	98	156	13	71
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 a ++q++l+kLk+ ++nL+re+R+++Ge+L++L ++++ +L +++++slk iR++K + Ote100037890011\|100037890011 98 IARKMQEHLKKLKEINRNLRREIRQRMGESLNDLGYEQIVNLIEDMDSSLKLIRETKLK 156 4679****************************************************966 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	30.095	25	85	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.5E-36	25	84	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.73E-37	26	97	No hit	No description
SuperFamily	SSF55455	4.19E-30	27	100	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	27	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-27	27	47	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-23	34	81	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-27	47	62	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.9E-27	62	83	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	1.3E-9	97	157	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	9.423	99	175	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
LELFHHFRRS VELXXXXXXX XXXXXARGKI QIKKIENQTN RQVTYSKRRN GLFKKAHELT 60 VLCDAKISIL MISSTQKLHE YISPTISTKQ IFDEYQKIAR KMQEHLKKLK EINRNLRREI 120 RQRMGESLND LGYEQIVNLI EDMDSSLKLI RETKLKNVED IHKGLLLQFD DPHYGLVEND 180 GDYNSVMGFP HGGPRIIAVC APPNXXXXXX XXXSLHSGTG ASDLTTYALL E

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	2e-14	26	83	2	59	MEF2C
5f28_B	2e-14	26	83	2	59	MEF2C
5f28_C	2e-14	26	83	2	59	MEF2C
5f28_D	2e-14	26	83	2	59	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001306615.1	1e-108	floral homeotic protein DEFICIENS
Swissprot	P23706	1e-108	DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBL	A0A2D0USD5	1e-112	A0A2D0USD5_SALMI; MADS box transcription factor
STRING	Migut.N03130.1.p	3e-96	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2314	24	51

Publications ? help Back to Top
Schwarz-Sommer Z, et al. Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development. EMBO J., 1992. 11(1): p. 251-63 [PMID:1346760] Sommer H, et al. Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors. EMBO J., 1990. 9(3): p. 605-13 [PMID:1968830] Gallois JL, et al. Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana. Gene, 2013. 526(2): p. 299-308 [PMID:23747397] Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H Multiple interactions amongst floral homeotic MADS box proteins. EMBO J., 1996. 15(16): p. 4330-43 [PMID:8861961]