PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100038550011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

SBP

Protein Properties

Length: 194aa MW: 21736.1 Da PI: 10.1779

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100038550011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	130.8	4.8e-41	48	125	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+++ Ote100038550011\|100038550011 48 RCQAEGCNADLTHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKSHH 125 6**************************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.8E-35	44	110	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.308	46	123	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.67E-38	47	127	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.4E-31	49	122	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009554	Biological Process	megasporogenesis
GO:0009556	Biological Process	microsporogenesis
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence Send to blast
MVGGLEFNSR IGLNLGGRTY FASSEDDFVN RLYRRSRILD PGSVNSPRCQ AEGCNADLTH 60 AKHYHRRHKV CEFHSKAATV IAAGLTQRFC QQCSRFHLLS EFDNGKRSCR KRLADHNRRR 120 RKSHHTNQEN PNKSHAETAL TSSSENLARS PPDSGHHSSS VTVAISPPRI SLDCFRHGSY 180 TTSSTTSTSS LFYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-31	42	122	4	84	squamosa promoter binding protein-like 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269\|PubMed:12671094, ECO:0000269\|PubMed:16095614, ECO:0000269\|PubMed:17093870}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00090	SELEX	Transfer from AT1G02065	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012843548.1	1e-112	PREDICTED: squamosa promoter-binding-like protein 8
Refseq	XP_012843549.1	1e-112	PREDICTED: squamosa promoter-binding-like protein 8
Swissprot	Q8GXL3	5e-72	SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBL	A0A075FEV5	1e-112	A0A075FEV5_SALMI; SQUAMOSA promoter binding protein-like 12 (Fragment)
STRING	Migut.B01572.1.p	1e-111	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4846	23	41

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xing S, et al. SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility. Plants (Basel), 2013. 2(3): p. 416-28 [PMID:27137384]