PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100038860061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NAC

Protein Properties

Length: 211aa MW: 24108.2 Da PI: 6.5202

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100038860061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	118.3	7.3e-37	13	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrF+Ptdee+v +yL +k+ +++l++ i+e+d++ ++Pw+Lp v +e+++yfF ++++ + r rat+sg Ote100038860061\|100038860061 13 LPPGFRFRPTDEEIVFQYLSRKTFSHPLPA-LLIPEFDVFAFDPWELP-GVGDGEQDMYFFYNKENG--RALRYGRATDSG 89 79***********************999.67***********.677889999998875..568****** PP NAM 82 yWkatgkdkevlskkgel.vglkktLvfykg.rapkgektdWvmheyrl 128 +Wkatg++k+++++k+ vg+++ ++fy+g ++ ++ +tdW+mhey + Ote100038860061\|100038860061 90 FWKATGTSKRIICSKEIPiVGIRRAFAFYRGaKHDRAIRTDWIMHEYYI 138 *****99996444359*****996778899*******75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-44	5	167	IPR003441	NAC domain
PROSITE profile	PS51005	45.595	13	167	IPR003441	NAC domain
Pfam	PF02365	3.2E-21	14	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MEKLNFARGG SKLPPGFRFR PTDEEIVFQY LSRKTFSHPL PALLIPEFDV FAFDPWELPG 60 VGDGEQDMYF FYNKENGRAL RYGRATDSGF WKATGTSKRI ICSKEIPIVG IRRAFAFYRG 120 AKHDRAIRTD WIMHEYYITL SENPHNDNSE GCLIRIGKWT LCRIFLKNRM RATAVGDDFL 180 TETDMDTSDS YTSSASSSTS DSGIFDEVSS M

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-32	13	168	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-32	13	168	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-32	13	168	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-32	13	168	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-32	13	168	20	169	NAC domain-containing protein 19
3swm_B	2e-32	13	168	20	169	NAC domain-containing protein 19
3swm_C	2e-32	13	168	20	169	NAC domain-containing protein 19
3swm_D	2e-32	13	168	20	169	NAC domain-containing protein 19
3swp_A	2e-32	13	168	20	169	NAC domain-containing protein 19
3swp_B	2e-32	13	168	20	169	NAC domain-containing protein 19
3swp_C	2e-32	13	168	20	169	NAC domain-containing protein 19
3swp_D	2e-32	13	168	20	169	NAC domain-containing protein 19
4dul_A	2e-32	13	168	17	166	NAC domain-containing protein 19
4dul_B	2e-32	13	168	17	166	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011083447.1	3e-71	NAC domain-containing protein 83
Swissprot	Q9FY93	4e-45	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A2G9HP54	4e-68	A0A2G9HP54_9LAMI; Uncharacterized protein
STRING	Migut.D01296.1.p	3e-64	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]