PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100038880011

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

C2H2

Protein Properties

Length: 351aa MW: 38646.9 Da PI: 8.8773

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100038880011	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00024	99	121	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Ote100038880011\|100038880011 99 WKCEKCSKKYAVQSDWKAHSKTC 121 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	8.1E-5	87	120	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
SRCRSCCAIT QDVDGDKPIH LRNLQQRLSE GPESXXXXXX XXGHNLPWKL KQRANKDQIK 60 KKVYICPEKS CVHHDPARAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT 120 CGTREYKCDC GTLFSRYLIN PTSILKDSFI THRAFCDALA EESARNLSFR NDDLSGNLIT 180 PQPNSGFNSF AGNSILADNN LQKPRLSLCD EGGADDGRLS GFALLRQPKL CEIAGVXXXX 240 XXXXXXXXXX XXKAAQMGST KSSPAFFGNA VGVMNSSSPP PSVMNFGACN NDLDLHQSMN 300 RHSGLMHGVE NSLTRDFLGV GGEGGPFLPQ ELVKFASMAP AMGLGHFTGN H

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

SRCRSCCAIT QDVDGDKPIH LRNLQQRLSE GPESXXXXXX XXGHNLPWKL KQRANKDQIK  60
KKVYICPEKS CVHHDPARAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKT  120
CGTREYKCDC GTLFSRYLIN PTSILKDSFI THRAFCDALA EESARNLSFR NDDLSGNLIT  180
PQPNSGFNSF AGNSILADNN LQKPRLSLCD EGGADDGRLS GFALLRQPKL CEIAGVXXXX  240
XXXXXXXXXX XXKAAQMGST KSSPAFFGNA VGVMNSSSPP PSVMNFGACN NDLDLHQSMN  300
RHSGLMHGVE NSLTRDFLGV GGEGGPFLPQ ELVKFASMAP AMGLGHFTGN H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-34	95	173	3	72	Zinc finger protein JACKDAW
5b3h_F	2e-34	95	173	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016542707.1	1e-91	PREDICTED: zinc finger protein JACKDAW-like isoform X1
Refseq	XP_016542708.1	1e-91	PREDICTED: zinc finger protein JACKDAW-like isoform X2
TrEMBL	A0A4D8ZH05	1e-100	A0A4D8ZH05_SALSN; Uncharacterized protein
STRING	Gorai.009G418600.1	7e-86	(Gossypium raimondii)