PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100039230111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HSF
Protein Properties Length: 269aa    MW: 30920 Da    PI: 4.8072
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100039230111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.18.9e-36261162101
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d+++++++sw+++g++f+v+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+kv  ++         weF+
  Ote100039230111|100039230111  26 FLTKTYQLVDDHAVDDVVSWNADGTTFIVWNQAEFARDLLPKYFKHNNFSSFIRQLNTYGFRKVAADR---------WEFS 97 
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkk 101
                                   ++sF++g+k+ll +i+r++
  Ote100039230111|100039230111  98 NDSFRRGEKQLLLDIQRRR 116
                                   *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.7E-3819109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.6E-5622115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.98E-3423115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.4E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.5E-3226115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MASPSTDRKG GELSGEDMPR VAPTPFLTKT YQLVDDHAVD DVVSWNADGT TFIVWNQAEF  60
ARDLLPKYFK HNNFSSFIRQ LNTYGFRKVA ADRWEFSNDS FRRGEKQLLL DIQRRRMAIS  120
PSVLAEDGGS TADLISENER LRKQNLQLNX XXXXXXXXXX MKNLCNSIYI MMSEYSGGGG  180
CEEHMHACEM YMKHGVEPLE LLPMSSFCEE MAAEEEMLGE KRWRESQGTS PTEHDNEMEL  240
ELGIKHEPLD GPNNMYNSVQ KTREQRIIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-252612020125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076201.18e-92heat stress transcription factor B-2a
RefseqXP_011076202.18e-92heat stress transcription factor B-2a
SwissprotQ9SCW42e-61HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A2Z4K5C01e-100A0A2Z4K5C0_TECGR; HSF2 protein
STRINGMigut.F00357.1.p6e-83(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]