PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100039810081
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family Trihelix
Protein Properties Length: 241aa    MW: 27221.5 Da    PI: 5.9148
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100039810081genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.26.1e-2534116186
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   +W+ qe+++ + +r e++ ++ ++k++k lWe +s++m+e+g++rs++qCk+kw+nl +ryk ++++e +     ++++p+
  Ote100039810081|100039810081  34 QWSIQETRDFLMIRAELDPNFMETKRNKLLWEVISARMKEKGYNRSAEQCKCKWKNLVTRYKGCETMETEA---MRQQFPF 111
                                   7********************************************************************85...56689** PP

                      trihelix  82 fdqle 86 
                                   +++l+
  Ote100039810081|100039810081 112 YNELQ 116
                                   **997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.3642791IPR017877Myb-like domain
CDDcd122039.72E-273398No hitNo description
PfamPF138371.3E-2034117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDHGXXXXXX XXXXYXXXXX XXXXXXXXXX RFPQWSIQET RDFLMIRAEL DPNFMETKRN  60
KLLWEVISAR MKEKGYNRSA EQCKCKWKNL VTRYKGCETM ETEAMRQQFP FYNELQTIFA  120
TRMQRMLWLE AEGSGGGATS SKKKTPAQFS SXXXXXXXXX XXXXPPKKKR RAKAAXXXXX  180
XXXXXXXXXE SDGGGTEGDD GGIHEAANAG GNAVDEGVRR EGGGEESEGD GVEADNGGVG  240
E
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SDW05e-52TGT3A_ARATH; Trihelix transcription factor GT-3a
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343