PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100040360211
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C3H
Protein Properties Length: 250aa    MW: 27173.4 Da    PI: 9.4061
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100040360211genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.3e-063558225
                                  -S---SGGGGTS--TTTTT-SS-S CS
                       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                                  k ++C  f+ t  C++Gd C+F H
  Ote100040360211|100040360211 35 KSKPCTKFFSTSGCSFGDACHFQH 58
                                  7789*******************9 PP
2zf-CCCH18.73.2e-061051181427
                                   --TTTTT-SS-SSS CS
                       zf-CCCH  14 tCkyGdrCkFaHgp 27 
                                    C+yGd+C+FaHg+
  Ote100040360211|100040360211 105 GCRYGDKCHFAHGE 118
                                   5***********96 PP
3zf-CCCH31.62.7e-10217241126
                                   --S---SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                   +k +lC  f++ G C +GdrC+FaH+
  Ote100040360211|100040360211 217 FKKRLCEKFSK-GLCTFGDRCHFAHS 241
                                   699********.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.9673361IPR000571Zinc finger, CCCH-type
SMARTSM003560.873360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-63463IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-63558IPR000571Zinc finger, CCCH-type
PfamPF146080.454158No hitNo description
SuperFamilySSF902294.08E-890122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-1390124IPR000571Zinc finger, CCCH-type
SMARTSM003560.1791118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.27791119IPR000571Zinc finger, CCCH-type
PfamPF146080.018106117No hitNo description
SMARTSM003222.2E-8115189IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.5E-13130188IPR004088K Homology domain, type 1
SuperFamilySSF547911.4E-12130192IPR004088K Homology domain, type 1
PfamPF000138.8E-9131185IPR004088K Homology domain, type 1
CDDcd001052.56E-12131184No hitNo description
PROSITE profilePS5008412.244133184IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.8E-13214246IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-8215246IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4216242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.643217243IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-8217241IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDFGRKRGRP DAAGNGGFKR SKEEMDSFTT GVGSKSKPCT KFFSTSGCSF GDACHFQHYV  60
PGYNAHTQLA NLGGNNLGGR SSSISDSPAP TMKTKICNRI NTPEGCRYGD KCHFAHGEME  120
LNKPNNPNAA FAGPIIGKNG ANSKQICRQT GVKLSIKDHE TDPSQRNIEL EGTFDQIKEA  180
SSMVRHLIMN LNTSSGQGHL ENRHVGSFGR GAAPSHFKKR LCEKFSKGLC TFGDRCHFAH  240
SASELRNSLD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087061.11e-130zinc finger CCCH domain-containing protein 14 isoform X1
SwissprotQ7F8R08e-81C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A022QHP91e-121A0A022QHP9_ERYGU; Uncharacterized protein
STRINGMigut.B01362.1.p1e-122(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498