PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100040361011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family HD-ZIP
Protein Properties Length: 242aa    MW: 27464.7 Da    PI: 9.2509
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100040361011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-0978124247
                                   T--SS--HHHHHHHHHHHHHSSS--HH.HHHHHHHHCTS-HHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsae.ereeLAkklgLterqVkvW 47 
                                   rk+ +++keq   Lee F+++++++ + ++  LAk+l+L  rqV vW
  Ote100040361011|100040361011  78 RKKLRLSKEQSAFLEESFKEHNTLNPQkQKLALAKQLNLRPRQVEVW 124
                                   778899**************999997626779*************** PP
2HD-ZIP_I/II88.11.1e-2878162192
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 
                                   +kk+rlskeq+++LEesF+e+++L+p ++K +la++L+l+prqv+vW       tk+kq+E+d+e+Lkr++d+l+een+rL
  Ote100040361011|100040361011  78 RKKLRLSKEQSAFLEESFKEHNTLNPqKQKLALAKQLNLRPRQVEVW-------TKLKQTEVDCEYLKRCCDTLTEENRRL 151
                                   69***********************94579*****************.......8************************** PP

                   HD-ZIP_I/II  81 ekeveeLreelk 92 
                                   +ke +eLr +lk
  Ote100040361011|100040361011 152 HKELQELR-ALK 162
                                   *******9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.63E-868124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-968124IPR009057Homeodomain-like
PROSITE profilePS5007110.51174135IPR001356Homeobox domain
SMARTSM003890.003376134IPR001356Homeobox domain
CDDcd000861.52E-778124No hitNo description
PfamPF000469.3E-778124IPR001356Homeobox domain
SMARTSM003402.8E-25128171IPR003106Leucine zipper, homeobox-associated
PfamPF021839.3E-12128162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGQPAAKGLD VNRAPAPAAE EVSSANSVGS PFGMDFNMYR NPLNGNLPLA GHKREXXXXX  60
XXXXXXXNDD DENGINTRKK LRLSKEQSAF LEESFKEHNT LNPQKQKLAL AKQLNLRPRQ  120
VEVWTKLKQT EVDCEYLKRC CDTLTEENRR LHKELQELRA LKSSNPFYMQ LPATTLTMCP  180
SCERXXXXXX XXXXXXXXXX XXXXXXKTAA AEPSSSIPKA IPFPLTRPRF YPFSHPNQPA  240
AS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093390.11e-106homeobox-leucine zipper protein HOX11-like
SwissprotA2YW037e-69HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
TrEMBLA0A2G9I6091e-104A0A2G9I609_9LAMI; Transcription factor HEX
STRINGXP_009617361.16e-92(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186