PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100040870191

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

G2-like

Protein Properties

Length: 289aa MW: 31770.4 Da PI: 6.5135

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100040870191	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.2	4.3e-34	38	92	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Ote100040870191\|100040870191 38 KPRLRWTADLHERFVDAVTQLGGADKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 92 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.666	35	95	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.5E-33	36	92	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.09E-16	37	92	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.3E-24	38	93	IPR006447	Myb domain, plants
Pfam	PF00249	5.0E-8	40	91	IPR001005	SANT/Myb domain
Pfam	PF14379	4.3E-26	131	176	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MYSALPLHTL AVEPDFQGSL DGTNLPGDAC LILSTDPKPR LRWTADLHER FVDAVTQLGG 60 ADKATPKTIM RTMGVKGLTL YHLKSHLQKY RLGKLASSKD LTEISKDEEW YKPFILFTIT 120 LAVQVEIDAL VTEALRVQME VQRKLHEQLE VQRHLQIRIE AQSKYLQSIL DKACKALDDE 180 AAASAGLEVA RKELSVLAIK VANDCNGVLS VPPSSHIHNE SDNDTNSIPY MPARLGECSI 240 DSGAMSNGSP ISPSTLESQA AAMKKRPRPL FSGGDGSMRP VEWMMSNFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-19	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-19	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-19	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-19	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-19	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-19	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-19	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-19	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-19	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-19	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-19	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-19	38	94	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011091432.1	1e-133	protein PHR1-LIKE 2 isoform X2
Swissprot	Q94A57	9e-95	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A4D9BKZ2	1e-141	A0A4D9BKZ2_SALSN; Uncharacterized protein
STRING	XP_002518104.1	1e-120	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3791	23	44

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]