PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100040920041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family C2H2
Protein Properties Length: 108aa    MW: 12259 Da    PI: 8.7259
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100040920041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.6e-052143123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  ++C++C + F ++  L  H++ H
  Ote100040920041|100040920041 21 FSCNYCRRKFYSSQALGGHQNAH 43
                                  89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.4E-71748No hitNo description
PROSITE profilePS5015711.0532148IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MNLELVLEPS SSAPAADQRV FSCNYCRRKF YSSQALGGHQ NAHKLERTLA KKNRELMRAD  60
AGSGRVRGRD FSYGHIEWIS SEYSDRGESG XXXXXXXELP HLDLSLRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269|PubMed:18192438}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069902.14e-29zinc finger protein 2-like
SwissprotQ392615e-24ZFP2_ARATH; Zinc finger protein 2
TrEMBLA0A4D8Z2462e-32A0A4D8Z246_SALSN; Uncharacterized protein
STRINGBra020437.1-P9e-26(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88762128