PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100041460061

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

LSD

Protein Properties

Length: 183aa MW: 19108.1 Da PI: 8.0906

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100041460061	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.7	8.2e-13	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCrt+L YP GA++V+Ca+C+ V Ote100041460061\|100041460061 7 CSGCRTVLLYPSGATNVCCAICNMV 31 ***********************98 PP
2	zf-LSD1	40.8	3.6e-13	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ rGA+sVRC++C+tV Ote100041460061\|100041460061 46 CGGCRTLLMHARGATSVRCSCCHTV 70 ************************9 PP
3	zf-LSD1	46.6	5.4e-15	93	117	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L++P+GApsV+Ca+C+++ Ote100041460061\|100041460061 93 CGNCHTMLMFPAGAPSVKCAICHFI 117 ***********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	2.2E-12	4	34	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.9E-11	7	31	IPR005735	Zinc finger, LSD1-type
Gene3D	G3DSA:3.90.10.10	3.5E-4	39	115	No hit	No description
TIGRFAMs	TIGR01053	5.5E-16	43	73	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-11	46	70	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.7E-12	90	119	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.8E-13	93	117	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000303	Biological Process	response to superoxide
GO:0001666	Biological Process	response to hypoxia
GO:0002240	Biological Process	response to molecule of oomycetes origin
GO:0009626	Biological Process	plant-type hypersensitive response
GO:0009862	Biological Process	systemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104	Biological Process	regulation of ethylene-activated signaling pathway
GO:0010310	Biological Process	regulation of hydrogen peroxide metabolic process
GO:0010602	Biological Process	regulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618	Biological Process	aerenchyma formation
GO:0043069	Biological Process	negative regulation of programmed cell death

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MQSQLVCSGC RTVLLYPSGA TNVCCAICNM VNSVPPPGME MAQLICGGCR TLLMHARGAT 60 SVRCSCCHTV NLVPATAXXX XXXXXNNVAH INCGNCHTML MFPAGAPSVK CAICHFITNV 120 NMGDTRVPIP VHRPAGNSTS APTQSTSTAT TANSHNQTVV VQNPMTVDES GKLVSNVVVG 180 VTT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096731.1	6e-97	protein LSD1
Refseq	XP_020551343.1	1e-95	uncharacterized protein LOC105167533
Swissprot	Q6ASS2	7e-68	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A4D9AS33	1e-109	A0A4D9AS33_SALSN; Uncharacterized protein
STRING	XP_008225697.1	9e-87	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1679	24	67

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]