PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100042370111
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NF-YB
Protein Properties Length: 190aa    MW: 21211.9 Da    PI: 7.2577
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100042370111genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.31.7e-5628121194
                         NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyve 81 
                                   vreqdrflPian+srimkk+lP n+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++
  Ote100042370111|100042370111  28 VREQDRFLPIANISRIMKKALPPNGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYID 108
                                   69******************************************************************************* PP

                         NF-YB  82 plkvylkkyrele 94 
                                   plk+yl++yre++
  Ote100042370111|100042370111 109 PLKIYLNRYREIN 121
                                   ***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.2E-5323121IPR009072Histone-fold
SuperFamilySSF471136.99E-3931120IPR009072Histone-fold
PfamPF008082.0E-283498IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.7E-206280No hitNo description
PROSITE patternPS0068506581IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.7E-208199No hitNo description
PRINTSPR006151.7E-20100118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MADSQGATGS PVGGSHDSGG DQSPRSGVRE QDRFLPIANI SRIMKKALPP NGKIAKDAKE  60
TVQECVSEFI SFITSEASDK CQREKRKTIN GDDLLWAMAT LGFEDYIDPL KIYLNRYREI  120
NYFALQLIMF TLPWNVWSWT TSRWWQIEGD TKGSAKAADG SAKKDGLQQQ LPGSQQQSQQ  180
MMVPMRGGMD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-4729119393NF-YB
4awl_B2e-4729119494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4729119494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094723.17e-91nuclear transcription factor Y subunit B-8
SwissprotQ8VYK47e-76NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A1S3YCJ22e-83A0A1S3YCJ2_TOBAC; nuclear transcription factor Y subunit B-10-like isoform X1
STRINGMigut.J00411.1.p4e-87(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]