PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100043030001
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family M-type_MADS
Protein Properties Length: 230aa    MW: 26151.5 Da    PI: 9.5741
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100043030001genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.21.9e-171050242
                                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                                  +i n+s r+ tf kR++g++KK +ELS+LC++e + i++s+
  Ote100043030001|100043030001 10 FITNDSARKATFKKRKKGLMKKVSELSTLCGIESCAIVYSP 50
                                  89**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.35E-19155IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.03149IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-20160IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-9323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCG IESCAIVYSP YESQPDXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXKAAD QLKKLYKDNR  120
EKEITHLMYQ CLTGKGLNGL PIPDLNDMGW MLDHSLKEIY KRIDGLKKAA APAEEKRGQH  180
QWFQEWMGNA SEQPQQTGGV HGGGGGDEII VPFSDGNNHS AAMWFNAFFP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088101.11e-71agamous-like MADS-box protein AGL80
TrEMBLA0A2G9GXU48e-68A0A2G9GXU4_9LAMI; MADS box transcription factor
STRINGMigut.B00884.1.p2e-65(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367