PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100045400121

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

NF-YB

Protein Properties

Length: 155aa MW: 17395.3 Da PI: 4.8898

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100045400121	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	41.2	4.1e-13	19	113	6	95
NF-YB 6 rflPianvsrimkkvlPa...nakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyve 81 + lP + v r++k l + ++ is +d+ e + fi ++++ a+d c++ kr+ in++d++ al ++ f +++e Ote100045400121\|100045400121 19 EALPKTIVRRVVKDKLSQvstDSEISvlRDSLLAFSESARVFIHYLSATANDICKESKRQIINAEDVFNALEEIEFPEFIE 99 678888899999987754111555553368888899******************************************* PP NF-YB 82 plkvylkkyreleg 95 pl++ l+++r+ ++ Ote100045400121\|100045400121 100 PLRASLEEFRQKNA 113 ********8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	6.4E-31	11	149	IPR009072	Histone-fold
SuperFamily	SSF47113	2.0E-23	20	140	IPR009072	Histone-fold
Pfam	PF00808	9.8E-8	21	89	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MGEENDGKEA TESVVAEAEA LPKTIVRRVV KDKLSQVSTD SEISVLRDSL LAFSESARVF 60 IHYLSATAND ICKESKRQII NAEDVFNALE EIEFPEFIEP LRASLEEFRQ KNAGRKSQSK 120 AKDTNKTPKR KEPPATSEGR SKRHEVENGK EDDSD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088898.1	3e-72	DNA polymerase epsilon subunit 3
TrEMBL	A0A4D8ZG58	1e-72	A0A4D8ZG58_SALSN; DNA polymerase epsilon subunit 3
TrEMBL	A0A4D9BYI1	2e-72	A0A4D9BYI1_SALSN; DNA polymerase epsilon subunit 3
STRING	Migut.D02442.1.p	2e-68	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10161	24	27