PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100046530161
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 294aa    MW: 33453.9 Da    PI: 5.1968
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100046530161genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.85.1e-24129185659
                                   -EEEEEEE-...-TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   6 nWrKYGqKe...vkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   +WrKYGqK    ++   f+rsYYrCts++C vkk+vers++dp++v++tYeg+H+h+
  Ote100046530161|100046530161 129 QWRKYGQKAraaMNRFSFSRSYYRCTSTSCGVKKRVERSSDDPTIVVTTYEGTHTHP 185
                                   7*******6333666789**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.7E-22127187IPR003657WRKY domain
SuperFamilySSF1182906.54E-20127187IPR003657WRKY domain
PfamPF031061.9E-19129185IPR003657WRKY domain
SMARTSM007744.4E-22129186IPR003657WRKY domain
PROSITE profilePS5081120.61129187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MEEKQKESTE RENSTEKIAF SDEMMIPENS VFDISCEHKS SSFRFTDMLS VQDFTNPSSS  60
SSSIFDDLLQ NIASPFPAPE YSEVVNTPAT PNSSSVSSSS TETAANDDHK RHHQDEDQEP  120
DQENTTNKQW RKYGQKARAA MNRFSFSRSY YRCTSTSCGV KKRVERSSDD PTIVVTTYEG  180
THTHPCPLTP RGTFAVMPET TMLHHGSHFG MIPQIMYQQL TPQPMQQHQH QPYFHNLLTP  240
PLNFTTANTN TALFPPLFQE RRFCPPASST ARDDGLLQDM LPSEMFKSRT EEEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-141291872277Probable WRKY transcription factor 4
2lex_A3e-141291872277Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100744.22e-68probable WRKY transcription factor 48, partial
TrEMBLA0A2G9I0G13e-91A0A2G9I0G1_9LAMI; Uncharacterized protein
STRINGMigut.N00035.1.p4e-65(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13092479