PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100047690051
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family WRKY
Protein Properties Length: 260aa    MW: 29453 Da    PI: 9.4497
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100047690051genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.31.8e-29131187257
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                                   +D ++WrKYGqK++kgs++pr+YYrC+++ gC+++k+ver+++dp+++++tY+g+H 
  Ote100047690051|100047690051 131 SDMWSWRKYGQKPIKGSPYPRGYYRCSTSkGCMARKQVERNRSDPNMFIVTYSGDHX 187
                                   79************************9988**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-28119187IPR003657WRKY domain
PROSITE profilePS5081131.766125191IPR003657WRKY domain
SuperFamilySSF1182906.02E-25125188IPR003657WRKY domain
SMARTSM007744.1E-33130190IPR003657WRKY domain
PfamPF031065.7E-25132186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEDDWDLHAV VRSCXXXXXX XXXXXXXXXT AIPSSRDLSS SERDCNFSWF KDPFEARKSR  60
SVEDLHELWK PFFPKQQISP NSPKQKQQPF SLISGSNSKP SSSSHHPTPR SKKRKHHSKK  120
VCHVAAENLS SDMWSWRKYG QKPIKGSPYP RGYYRCSTSK GCMARKQVER NRSDPNMFIV  180
TYSGDHXXXX XXXXXXXXHR NSLAGCSRQK QSPPPTPQKS SSDEDADDFF AGLEDFASES  240
EPLQFPWMSS NAAATAAGGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-17119186674Disease resistance protein RRS1
5w3x_D2e-17119186674Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092990.12e-73WRKY transcription factor 22
SwissprotO046098e-61WRK22_ARATH; WRKY transcription factor 22
TrEMBLA0A0D5Y9Z13e-89A0A0D5Y9Z1_SALMI; WRKY protein
STRINGXP_009758175.19e-67(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25912457
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  3. Gkizi D, et al.
    The Innate Immune Signaling System as a Regulator of Disease Resistance and Induced Systemic Resistance Activity Against Verticillium dahliae.
    Mol. Plant Microbe Interact., 2016. 29(4): p. 313-23
    [PMID:26780421]
  4. Kloth KJ, et al.
    AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.
    J. Exp. Bot., 2016. 67(11): p. 3383-96
    [PMID:27107291]
  5. Camborde L, et al.
    Detection of nucleic acid-protein interactions in plant leaves using fluorescence lifetime imaging microscopy.
    Nat Protoc, 2017. 12(9): p. 1933-1950
    [PMID:28837131]
  6. Wang S, et al.
    Bacillus cereus AR156 Activates Defense Responses to Pseudomonas syringae pv. tomato in Arabidopsis thaliana Similarly to flg22.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 311-322
    [PMID:29090631]