PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100048850011
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family MYB_related
Protein Properties Length: 203aa    MW: 22518.3 Da    PI: 5.5909
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100048850011genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.4e-143173246
                                  SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                  g +T+eEd +++ + +  G++ W+ Ia+ ++ gRt++++k++w++
  Ote100048850011|100048850011 31 GGFTEEEDTIILTLYHNIGSR-WSVIASQLP-GRTDNDVKNYWNT 73
                                  569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.135124IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-111036IPR009057Homeodomain-like
SuperFamilySSF466897.27E-231079IPR009057Homeodomain-like
PROSITE profilePS5129420.922579IPR017930Myb domain
SMARTSM007171.0E-122977IPR001005SANT/Myb domain
PfamPF002494.2E-133173IPR001005SANT/Myb domain
CDDcd001671.64E-103373No hitNo description
Gene3DG3DSA:1.10.10.601.5E-193776IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MRFALLGGLK RCGKSCRLRW LNYLRPNLKH GGFTEEEDTI ILTLYHNIGS RWSVIASQLP  60
GRTDNDVKNY WNTKLKKKLL AAAAESNLIG TTSMAETAYN MLPYFKAEAD SYEQTLDTQI  120
HLPSLIEAPE NAYNSATLPS VPSTLSSPFS AAASSWSSTN EDDAFLVEFG CGLMPYDVMN  180
VVDFHGNFDH QISNLSFGYS SAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-20117940108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078220.11e-64transcription factor RAX2
TrEMBLA0A059PRF52e-69A0A059PRF5_SALMI; MYB-related transcription factor
STRINGXP_010437186.14e-44(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154