PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100049580021
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family NAC
Protein Properties Length: 215aa    MW: 24263.2 Da    PI: 4.6342
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100049580021genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM843e-261388177
                           NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra 77
                                  l pGfrFhPtdeelv +yLk+kv+++++++ + ik +diyk++PwdLpk    +eke yf+++rd+ky+++ r+nr 
  Ote100049580021|100049580021 13 LLPGFRFHPTDEELVGFYLKRKVQHQPIPA-DLIKLLDIYKYDPWDLPKVSPLGEKESYFYCPRDRKYKNSARPNRD 88
                                  579***************************.99***************87777999********************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-28887IPR003441NAC domain
PROSITE profilePS5100522.27913169IPR003441NAC domain
PfamPF023659.1E-121582IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDAEMKIDDE DVLLPGFRFH PTDEELVGFY LKRKVQHQPI PADLIKLLDI YKYDPWDLPK  60
VSPLGEKESY FYCPRDRKYK NSARPNRDSL ALCRVFKKAA NIANKALSFQ NETLSVLDHF  120
SLPSSDGHCF SAAGEASGGM GSSRTHLSSS SLFINPCSES GLISFENQQL LLDGFNSGVS  180
SQFMQEIIDF DDDKQSMEKY SWDLPSDLWD SPPCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-2511163114Stress-induced transcription factor NAC1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1649745