PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ote100049860041

Organism

Ocimum tenuiflorum

Taxonomic ID

204149

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum

Family

HSF

Protein Properties

Length: 335aa MW: 37528.4 Da PI: 5.9402

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ote100049860041	genome	OteDB	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.1	3.3e-34	18	110	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 F++k+y++++d+++++li+w + +nsf+v+++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+ Ote100049860041\|100049860041 18 FVMKTYQMVNDPATNRLITWGRANNSFIVMEPLDFSQRILPAYFKHHNFSSFVRQLNTYGFRKVDPDR---------WEFA 89 9******************999*************************************999......... PP ESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 83 hksFkkgkkellekikrkkse 103 ++F +g+ +ll++i rkk++ Ote100049860041\|100049860041 90 SEWFLRGQSHLLCNIVRKKHT 110 ****************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	9.2E-49	14	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.02E-31	15	107	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.3E-35	16	107	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.4E-29	18	107	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-17	18	41	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-17	56	68	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	57	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.1E-17	69	81	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006970	Biological Process	response to osmotic stress
GO:0009737	Biological Process	response to abscisic acid
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MRAMEVISSS SNNIIAPFVM KTYQMVNDPA TNRLITWGRA NNSFIVMEPL DFSQRILPAY 60 FKHHNFSSFV RQLNTYGFRK VDPDRWEFAS EWFLRGQSHL LCNIVRKKHT SRSNSSFHLK 120 HEDDEDEEQL MIEIAKLKQE QTSLEQELES MNRRLEATER RPQQMMTFLC KVVEDPEILP 180 RMMLEKEKMR RLTPTTDNDK KRKLIITTSS SNSLSGMALS GSSIKSEDDQ ESTPISSPEG 240 VFDRDAYSQS SPSLDMSSPD VGVAPMMRPD HPNYANLSSS LFICPAGGAG GLTAVAPPVG 300 GREAGDGFGY FEGLVAGERA SPPPPYPFSL LGGGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	8e-22	15	107	26	129	Heat shock factor protein 1
5d5v_B	8e-22	15	107	26	129	Heat shock factor protein 1
5d5v_D	8e-22	15	107	26	129	Heat shock factor protein 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00379	DAP	Transfer from AT3G24520	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071260.1	1e-131	heat stress transcription factor C-1-like
TrEMBL	A0A4D9A8E9	1e-177	A0A4D9A8E9_SALSN; Heat shock transcription factor, other eukaryote
STRING	Migut.E00326.1.p	1e-124	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6832	23	33