PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ote100049970041
Organism
Ocimum tenuiflorum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Ocimeae; Ocimum
Family AP2
Protein Properties Length: 393aa    MW: 43367.2 Da    PI: 7.6139
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ote100049970041genomeOteDB-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.4e-18123172155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a++k++g
  Ote100049970041|100049970041 123 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAALKFRG 172
                                   78*******************......55************************997 PP
2AP240.47.3e-13215265155
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV  +k  grW+A+   +     +k+++lg f+t+ eAa+a+++a+ k +g
  Ote100049970041|100049970041 215 SKYRGVALHK-CGRWEARMGQY--L-GKKYIYLGLFDTEVEAARAYDKAAIKCNG 265
                                   89********.7******5552..1.25**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-9123172IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-16123182IPR016177DNA-binding domain
PROSITE profilePS5103217.662124180IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-17124180IPR001471AP2/ERF domain
CDDcd000183.17E-11124182No hitNo description
SMARTSM003802.6E-31124186IPR001471AP2/ERF domain
CDDcd000184.30E-26215275No hitNo description
SuperFamilySSF541714.38E-17215274IPR016177DNA-binding domain
PfamPF008472.7E-8215265IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-17216274IPR001471AP2/ERF domain
PROSITE profilePS5103215.62216273IPR001471AP2/ERF domain
SMARTSM003806.6E-31216279IPR001471AP2/ERF domain
PRINTSPR003673.3E-6217228IPR001471AP2/ERF domain
PRINTSPR003673.3E-6255275IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MFDLNQSVDC NGKADHSELQ QSPATSISSV VDGGGETSSS NDDAYSTRAA VTLNFDIMGS  60
GGGYGESNGG RGLVTRELFP VSXXXXXXXX LNQTSESASQ MSVQVQPQVQ ARKSRRGPRS  120
RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTALAAA RAYDRAALKF RGVDADINFN  180
ISDYDEDMKQ TGSLSKEEFV HILRRQSTRF SRGTSKYRGV ALHKCGRWEA RMGQYLGKKY  240
IYLGLFDTEV EAARAYDKAA IKCNGREAVT NFESSSYHGE MTSDQRSSHD LDLNLGMSSG  300
NPGWFQFHVQ TASSSMMKLH VEGSGSINPQ HPLLSNPKYE EQVVKWAWHE EVPMPSSAAA  360
SSGFSSSSAS LNLCFSGAXX XXXXXXXXXX XXX
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089852.11e-132ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotB8AMA94e-97AP22_ORYSI; APETALA2-like protein 2
SwissprotQ84TB54e-97AP22_ORYSJ; APETALA2-like protein 2
TrEMBLA0A4D8ZLV31e-135A0A4D8ZLV3_SALSN; AP2-like factor, euAP2 lineage
STRINGGorai.009G104200.11e-113(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]